HUGE

Gene/Protein Characteristic Table for KIAA0260

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK01063
Accession No. :	D87449
Description :	UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter.
HUGO Gene Name :	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1 (SLC35D1)
Clone Name :	ha07062 [Vector Info]
Flexi ORF Clone :	pF1KA0260
Source :	Myeloblast cell line (KG-1)

Features of the cloned DNA sequence	Description

Length: 5918 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4764 bp

Genome contig ID gi89161185r_67137653
PolyA signal sequence
(AATAAA,-18)
+----*----+----*----+----*----+----
TTTTTGTAATGGTGTAAAATAAATACTTTTTCCTG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAACAAGTATTAAAATTCCTTTGTAACTGCATACAGAGACTAATCCAGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 1 r 67237653 67292370 13 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 383 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
XP_001151573	8.7e-150	99.7	solute carrier ...	Pan troglodytes
Q9NTN3	3.3e-139	100.0	UDP-glucuronic ...	Homo sapiens
Q5RDC9	7.1e-139	99.7	UDP-N-acetylglu...	Pongo abelii
XP_001093420	1.7e-138	99.4	similar to solu...	Macaca mulatta
A2VE55	5.3e-136	97.5	UDP-N-acetylglu...	Bos taurus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR004853 189 357 PF03151 Protein of unknown function DUF250

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR004853	189	357	PF03151	Protein of unknown function DUF250

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 64 TLTVFLKLLAAGFYGVSSFLIVV 86 SECONDARY 23

2 99 SSLCVGLGQMVATVAVLWVGKAL 121 PRIMARY 23

3 137 TFPLPLLYFGNQITGLFST 155 SECONDARY 19

4 159 NLPMFTVLRRFSILFTMFAEGVL 181 SECONDARY 23

5 186 FSWGIKMTVFAMIIGAFVAASSD 208 PRIMARY 23

6 212 DLEGYAFILINDVLTAANGAYVK 234 SECONDARY 23

7 245 YGLLYYNALFMILPTLAIAYFTG 267 SECONDARY 23

8 281 TLFLLQFTLSCVMGFILMYATVL 303 PRIMARY 23

9 311 LTTTIVGCIKNILITYIGMVFGG 333 SECONDARY 23

10 340 TNFIGLNISIAGSLVYSYITFTE 362 SECONDARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	64	TLTVFLKLLAAGFYGVSSFLIVV	86	SECONDARY	23
2	99	SSLCVGLGQMVATVAVLWVGKAL	121	PRIMARY	23
3	137	TFPLPLLYFGNQITGLFST	155	SECONDARY	19
4	159	NLPMFTVLRRFSILFTMFAEGVL	181	SECONDARY	23
5	186	FSWGIKMTVFAMIIGAFVAASSD	208	PRIMARY	23
6	212	DLEGYAFILINDVLTAANGAYVK	234	SECONDARY	23
7	245	YGLLYYNALFMILPTLAIAYFTG	267	SECONDARY	23
8	281	TLFLLQFTLSCVMGFILMYATVL	303	PRIMARY	23
9	311	LTTTIVGCIKNILITYIGMVFGG	333	SECONDARY	23
10	340	TNFIGLNISIAGSLVYSYITFTE	362	SECONDARY	23

Expression profile	Description

: Northern blot Description

Northern blot	Description

RH mapping information	Description

Chromosome No.

: 1

Experimental conditions

Panel name	: Genebridge 4
Primer_f	: TTGAAAGCACTTGACCCCATG
Primer_r	: CATCTTGAAAGTAAGACCTAG
PCR product length	: 121 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	4764 bp
Genome contig ID	gi89161185r_67137653
PolyA signal sequence (AATAAA,-18)	+--------+--------+----*----+---- TTTTTGTAATGGTGTAAAATAAATACTTTTTCCTG
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* AAAACAAGTATTAAAATTCCTTTGTAACTGCATACAGAGACTAATCCAGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	1	r	67237653	67292370	13	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0260

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information