hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22000008/chunk_1/iprscan-20080501-22000008.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0266 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04615.4.fs Utp14 protein 351.3 1.5e-102 2 PF04615.4.ls Utp14 protein 314.7 1.5e-91 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04615.4.fs 1/2 29 353 .. 1 384 [. 167.5 3.1e-47 PF04615.4.ls 1/1 29 735 .. 1 809 [] 314.7 1.5e-91 PF04615.4.fs 2/2 580 735 .. 634 809 .] 183.8 4e-52 Alignments of top-scoring domains: PF04615.4.fs: domain 1 of 2, from 29 to 353: score 167.5, E = 3.1e-47 *->mSdDsedeSdseeeEedsdDdaHkklLqsitklgtvkfiqesknkkr ++ede+ds+ H+klL +i +l+ ++ +++ KIAA0266 29 ---ENEDEGDSD------GERKHQKLLEAIISLDGKNRRKLAERSEA 66 kkkteaypesefnssrdtdsakeasgikdlldpletskkssdeakkisrk ++ sef+ + s++++ g+ dll+p +ts k ++r KIAA0266 67 -----SLKVSEFS-VSSEGSGEKL-GLADLLEPVKTSSSLATVKKQLNR- 108 tkdgqssvheiPLpkpeaekrlerkiayelvkkevtkkWvpLVkqnRerL + +++v PL+k e + r +a++ + + +kW+p+ +n++ KIAA0266 109 -VKSKKVVE-LPLNKEKIE-QIHREVAFSKTSQVL-SKWDPIILKNQQ-- 152 ERqAAYEqtknDLEkWkPivADnRkAdqlIFPlnkptvgvstvanARPLn A+ql+FPl k+ + KIAA0266 153 -------------------------AEQLVFPLGKEQPAIAPIE------ 171 taiaSqfePrTEfeeKmaqvLrdaeLentekedk.akeLeLnkaskltve S + rT +e+ +L ++ t++++++ + +L +s e KIAA0266 172 -HALSGWKARTPLEQEIFNLLHKNKQPVTDPLLTpMEKASLQAMS---LE 217 elikRrkelakMRelmfreEaKarrikKIKSKtYhkikKkekmKelmkaf e++ r el++ R+l + EaKar kKIKSK+Yhk Kk k K ++k+f KIAA0266 218 EAKMHRAELQRARALQSYYEAKARKEKKIKSKKYHKVVKKGKAKKALKEF 267 edLvkrdPeaaeEelikqEkaRvkERmTLKHKntgkWaKrMLeRGLasrd e L+k P a+Ee +k E aR +ERm+LKH n gkWaK + a++d KIAA0266 268 EQLQKVNPTVALEEMEKIENARMMERMSLKHQNSGKWAKSKAIM--AKYD 315 detRkalsEqLrigreLkqKmnstnsdsesdekRvlpE<-* e R a+ EqL+++ eL+qK ++ +++e+++ +E KIAA0266 316 LEARQAMQEQLAKNKELTQKLQVASESEEEEGGTEVEE 353 PF04615.4.ls: domain 1 of 1, from 29 to 735: score 314.7, E = 1.5e-91 *->mSdDsedeSdseeeEedsdDdaHkklLqsitklgtvkfiqesknkkr ++ede+ds+ H+klL +i +l+ ++ +++ KIAA0266 29 ---ENEDEGDSD------GERKHQKLLEAIISLDGKNRRKLAERSEA 66 kkkteaypesefnssrdtdsakeasgikdlldpletskkssdeakkisrk ++ sef+ + s++++ g+ dll+p +ts k ++r KIAA0266 67 -----SLKVSEFS-VSSEGSGEKL-GLADLLEPVKTSSSLATVKKQLNR- 108 tkdgqssvheiPLpkpeaekrlerkiayelvkkevtkkWvpLVkqnRerL + +++v PL+k e + r +a++ + + +kW+p+ +n++ KIAA0266 109 -VKSKKVVE-LPLNKEKIE-QIHREVAFSKTSQVL-SKWDPIILKNQQ-- 152 ERqAAYEqtknDLEkWkPivADnRkAdqlIFPlnkptvgvstvanARPLn A+ql+FPl k+ + KIAA0266 153 -------------------------AEQLVFPLGKEQPAIAPIE------ 171 taiaSqfePrTEfeeKmaqvLrdaeLentekedk.akeLeLnkaskltve S + rT +e+ +L ++ t++++++ + +L +s e KIAA0266 172 -HALSGWKARTPLEQEIFNLLHKNKQPVTDPLLTpMEKASLQAMS---LE 217 elikRrkelakMRelmfreEaKarrikKIKSKtYhkikKkekmKelmkaf e++ r el++ R+l + EaKar kKIKSK+Yhk Kk k K ++k+f KIAA0266 218 EAKMHRAELQRARALQSYYEAKARKEKKIKSKKYHKVVKKGKAKKALKEF 267 edLvkrdPeaaeEelikqEkaRvkERmTLKHKntgkWaKrMLeRGLasrd e L+k P a+Ee +k E aR +ERm+LKH n gkWaK + a++d KIAA0266 268 EQLQKVNPTVALEEMEKIENARMMERMSLKHQNSGKWAKSKAIM--AKYD 315 detRkalsEqLrigreLkqKmnstnsdsesdekRvlpE........evse e R a+ EqL+++ eL+qK ++ +++e+++ +E ++ +ev+ KIAA0266 316 LEARQAMQEQLAKNKELTQKLQVASESEEEEGGTEVEEllvphvanEVQM 365 gsDpdnpskeiaeteekklkngEdekvkqvglmslefkaralkkenvrdl D np+ + t +k ++ l+ e a+++ + v + KIAA0266 366 NVDGPNPWMFRSCTSDTKEAATQEDPEQVPELAAHEVSASEAEERPVAEE 415 eevkrkeEqeeieelekdgieknpkkskevkgrrvfgagsekedkkeakq e r++ ee l+k+ +e n ++ + + ++ +e+ ++ a KIAA0266 416 EILLREF--EERQSLRKR-SELNQDAEPASSQETKDSSSQEVLSELRA-- 460 ksdklkdnsvsedndlekrednkkegqkKnaskarntspimeeekvegkl s+klk+ s k k + + + +++r++ + +e+e++ KIAA0266 461 LSQKLKEKHQS-----RK---QKASSEGTVPQVQREEPAPEEAEPLLLQR 502 qkpasktqsakalaankskkkieidenkeskkasktevpisssvdgvkAm + + ++ l ++ +++e + + s + ++ KIAA0266 503 SERVQTLEELEELGKEDCFQNKELPRPVLEGQQSERTPNNRPDAP----- 547 nknekaelkpkeskdekskdsesvllqkeasqmvdgvlliddedaesket + ++ +e l+++ s + v++ e+ e+ KIAA0266 548 ---------KEKKEKEQLINLQNFLTTQSPSVRSLAVPT----IIEELED 584 yfiaeqaelIaeAFaGDDVVadFekdKeeVldqEvpkpEvdlaLPGWGsW + q++ I eAFaGDDV+ dF k+K e ++ +pk +vdl+LPGWG+W KIAA0266 585 EEERDQRQMIKEAFAGDDVIRDFLKEKREAVEASKPK-DVDLTLPGWGEW 633 aGvQkKaGlppkmvkrkekakkkrkadpkKRrDenlknVIInEkvnKKaG +G Gl+p +kr+ + +++ R+D+nl nVII+Ek+n a KIAA0266 634 GG----VGLKPSAKKRR--QFLIKAPEGPPRKDKNLPNVIISEKRNIHA- 676 iaKlqtsSlPFPfesrEdYErSLrmPiGpEwnpetshgeLvrPrvPfyyl a +q++ lP+Pf+ ++Er + PiG wn+ ++++L+ P KIAA0266 677 -AAHQVQVLPYPFTHHRQFERTIQTPIGSTWNTQRAFQKLTTPK------ 719 lnlhhVVtkaGqvIkPikape<-* VVtk+G +IkPika+ KIAA0266 720 -----VVTKPGHIIKPIKAED 735 PF04615.4.fs: domain 2 of 2, from 580 to 735: score 183.8, E = 4e-52 *->esketyfiaeqaelIaeAFaGDDVVadFekdKeeVldqEvpkpEvdl e+ e+ + q++ I eAFaGDDV+ dF k+K e ++ +pk +vdl KIAA0266 580 EELEDEEERDQRQMIKEAFAGDDVIRDFLKEKREAVEASKPK-DVDL 625 aLPGWGsWaGvQkKaGlppkmvkrkekakkkrkadpkKRrDenlknVIIn +LPGWG+W+G Gl+p +kr+ + +++ R+D+nl nVII+ KIAA0266 626 TLPGWGEWGG----VGLKPSAKKRR--QFLIKAPEGPPRKDKNLPNVIIS 669 EkvnKKaGiaKlqtsSlPFPfesrEdYErSLrmPiGpEwnpetshgeLvr Ek+n a a +q++ lP+Pf+ ++Er + PiG wn+ ++++L+ KIAA0266 670 EKRNIHA--AAHQVQVLPYPFTHHRQFERTIQTPIGSTWNTQRAFQKLTT 717 PrvPfyyllnlhhVVtkaGqvIkPikape<-* P VVtk+G +IkPika+ KIAA0266 718 PK-----------VVTKPGHIIKPIKAED 735 //