hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /db/iprscan/data/smart.HMMs.bin
Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22205650/chunk_1/iprscan-20080501-22205650.nocrc
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Query sequence: KIAA0279
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
SM00112 841.2 2.1e-248 9
SM00282 211.0 1.1e-58 2
SM00181 169.5 3.3e-46 6
SM00179 116.7 2.7e-30 5
SM00303 103.1 3.2e-26 1
SM00008 88.2 9.6e-22 1
SM00180 54.6 1.2e-11 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
SM00112 1/9 134 218 .. 1 121 [] 102.8 4e-26
SM00112 2/9 242 328 .. 1 121 [] 112.1 6.1e-29
SM00112 3/9 352 434 .. 1 121 [] 105.7 5.4e-27
SM00112 4/9 458 539 .. 1 121 [] 116.2 3.6e-30
SM00112 5/9 563 641 .. 1 121 [] 75.4 7.1e-18
SM00112 6/9 665 744 .. 1 121 [] 114.2 1.5e-29
SM00112 7/9 768 850 .. 1 121 [] 111.3 1.1e-28
SM00112 8/9 874 952 .. 1 121 [] 95.6 6e-24
SM00112 9/9 980 1056 .. 1 121 [] 7.9 0.4
SM00181 1/6 1162 1217 .. 1 32 [] 27.1 0.0024
SM00179 1/5 1219 1255 .. 1 34 [] 43.4 3e-08
SM00181 2/6 1222 1255 .. 1 32 [] 32.3 6.5e-05
SM00181 3/6 1262 1297 .. 1 32 [] 22.3 0.069
SM00179 2/5 1263 1297 .. 1 34 [] 21.1 0.0041
SM00282 1/2 1318 1485 .. 1 137 [] 115.1 7.6e-30
SM00179 3/5 1505 1541 .. 1 34 [] 28.3 0.00052
SM00181 4/6 1508 1541 .. 1 32 [] 30.9 0.00018
SM00282 2/2 1567 1701 .. 1 137 [] 95.9 4.8e-24
SM00179 4/5 1726 1760 .. 1 34 [] 17.7 0.011
SM00181 5/6 1727 1760 .. 1 32 [] 28.1 0.0012
SM00181 6/6 1762 1798 .. 1 32 [] 28.8 0.00074
SM00179 5/5 1764 1798 .. 1 34 [] 6.2 0.28
SM00180 1/1 1855 1900 .. 1 42 [] 54.6 1.2e-11
SM00008 1/1 1903 1965 .. 1 89 [] 88.2 9.6e-22
SM00303 1/1 2246 2299 .. 1 51 [] 103.1 3.2e-26
Alignments of top-scoring domains:
SM00112: domain 1 of 9, from 134 to 218: score 102.8, E = 4e-26
*->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
++A+D+D+g e g+ ++Y++ +++++++Fs+dp tG
KIAA0279 134 LRAIDPDEG---EAGR------LEYTMDAlfdsrsnqFFSLDPVTG- 170
ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
+tt+++LDRE++ s++ ++v+A+D+G+p+
KIAA0279 171 ----------AVTTAEELDRETK---------STHVFRVTAQDHGMPR-- 199
dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
+s+ at+t+ V+D ND+ P
KIAA0279 200 -------------RSALATLTILVTDTNDHDP 218
SM00112: domain 2 of 9, from 242 to 328: score 112.1, E = 6.1e-29
*->vsAtDaDsgsngeNgkpgdaevvtYsils........lFsIdpetGt
v+AtD D++ +N++ + Y++l+++++++++ F+Idp++G
KIAA0279 242 VRATDGDAP---PNAN------ILYRLLEgsggspseVFEIDPRSG- 278
ngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppg
+i+t++p DREe ++Y+LtveA+D+G p++
KIAA0279 279 ----------VIRTRGPVDREEV---------ESYQLTVEASDQGRDPGP 309
dssptrksqqtpplsstatvtvtVlDvNDNaP<-*
+s+ta v V+D NDNaP
KIAA0279 310 -------------RSTTAAVFLSVEDDNDNAP 328
SM00112: domain 3 of 9, from 352 to 434: score 105.7, E = 5.4e-27
*->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
v+A+D+D g +N+ v+Ysi s++ +++F +d++tG
KIAA0279 352 VTASDRDKG---SNAV------VHYSIMSgnargQFYLDAQTG---- 385
sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
+ ++ pLD+E++ +eYtL+v+A+DgG pp
KIAA0279 386 -------ALDVVSPLDYETT---------KEYTLRVRAQDGGRPPL---- 415
ptrksqqtpplsstatvtvtVlDvNDNaP<-*
+ vtv+VlD+NDNaP
KIAA0279 416 ----------SNVSGLVTVQVLDINDNAP 434
SM00112: domain 4 of 9, from 458 to 539: score 116.2, E = 3.6e-30
*->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
v+A+DaD+g +N++ ++Y++ + +++ +F+I+ tG
KIAA0279 458 VQAIDADAG---DNAR------LEYRLAGvghdfPFTINNGTG---- 491
sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
+i+++++LDREe + Y++ veA+D+G+p
KIAA0279 492 -------WISVAAELDREEV---------DFYSFGVEARDHGTPA----- 520
ptrksqqtpplsstatvtvtVlDvNDNaP<-*
l+++a+v vtVlDvNDN P
KIAA0279 521 ----------LTASASVSVTVLDVNDNNP 539
SM00112: domain 5 of 9, from 563 to 641: score 75.4, E = 7.1e-18
*->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
vsA+D+D+ + +tY+i+s+++++ FsI +++G
KIAA0279 563 VSAVDRDA-----HSV------ITYQITSgntrnRFSITSQSG---- 594
sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
+ ++++ pLD+ +Y L v+A+Dg
KIAA0279 595 -----GGLVSLALPLDYKLE---------RQYVLAVTASDGT-------- 622
ptrksqqtpplsstatvtvtVlDvNDNaP<-*
+++ta+++v+V+D N ++P
KIAA0279 623 ----------RQDTAQIVVNVTDANTHRP 641
SM00112: domain 6 of 9, from 665 to 744: score 114.2, E = 1.5e-29
*->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL
+sAtD+D+g eN++ +tY ++++ ++F+Id++tG
KIAA0279 665 ISATDEDTG---ENAR------ITYFMEDsipQFRIDADTG------ 696
vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt
+tt+++LD+E+q +YtL ++A+D+G p+
KIAA0279 697 -----AVTTQAELDYEDQ---------VSYTLAITARDNGIPQ------- 725
rksqqtpplsstatvtvtVlDvNDNaP<-*
+s+t+ + + V DvNDNaP
KIAA0279 726 --------KSDTTYLEILVNDVNDNAP 744
SM00112: domain 7 of 9, from 768 to 850: score 111.3, E = 1.1e-28
*->vsAtDaDsgsngeNgkpgdaevvtYsils......lFsIdpetGtng
+sAtD+Dsg Ng+ v Y++ +++++++ F +++++G
KIAA0279 768 ISATDRDSG---LNGR------VFYTFQGgddgdgDFIVESTSG--- 802
psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
i++t+++LDRE+ ++Y L+ A+D+G+pp
KIAA0279 803 --------IVRTLRRLDRENV---------AQYVLRAYAVDKGMPP---- 831
sptrksqqtpplsstatvtvtVlDvNDNaP<-*
++ +vtvtVlDvNDN+P
KIAA0279 832 -----------ARTPMEVTVTVLDVNDNPP 850
SM00112: domain 8 of 9, from 874 to 952: score 95.6, E = 6e-24
*->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
v+AtD+D+g +N++ + Y+i++++ ++ F++d +G
KIAA0279 874 VTATDPDEG---TNAQ------IMYQIVEgnipeVFQLDIFSG---- 907
sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
++t++ LD+E++ +eY L+++At +
KIAA0279 908 -------ELTALVDLDYEDR---------PEYVLVIQATSAP-------- 933
ptrksqqtpplsstatvtvtVlDvNDNaP<-*
l s atv+v++lD NDN+P
KIAA0279 934 ----------LVSRATVHVRLLDRNDNPP 952
SM00112: domain 9 of 9, from 980 to 1056: score 7.9, E = 0.4
*->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
v A+D+D + +tYs++++++ +l ++++tG
KIAA0279 980 VPAHDPDI-----SDS------LTYSFERgnelsLVLLNASTG---- 1011
sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
+++++++LD e + v ++Dg
KIAA0279 1012 -------ELKLSRALDNNRP---------LEAIMSVLVSDGV-------- 1037
ptrksqqtpplsstatvtvtVlDvNDNaP<-*
+s ta+ +V+ + D
KIAA0279 1038 ----------HSVTAQCALRVTIITDEML 1056
SM00181: domain 1 of 6, from 1162 to 1217: score 27.1, E = 0.0024
*->eCa..pCsnGgtEqnGtCi..........................sy
C+++pC+n +C++ + +++ + +++ ++ ++ ++
KIAA0279 1162 ICLrePCENY-----MRCVsvlrfdssapfiasssvlfrpihpvgGL 1203
tC.CpgpGytg.rCe<-*
+C+Cp pG+tg++Ce
KIAA0279 1204 RCrCP-PGFTGdYCE 1217
SM00179: domain 1 of 5, from 1219 to 1255: score 43.4, E = 3e-08
*->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
+D C ++pC+++G +C+ ++G+Y+C C++Gyt+ +Ce
KIAA0279 1219 EVDLCysrPCGPHG---RCRSrEGGYTClCRDGYTgEHCE 1255
SM00181: domain 2 of 6, from 1222 to 1255: score 32.3, E = 6.5e-05
*->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
C ++pC+++ G+C++++++ytC C+ +Gytg++Ce
KIAA0279 1222 LCYsrPCGPH-----GRCRsregGYTClCR-DGYTGeHCE 1255
SM00181: domain 3 of 6, from 1262 to 1297: score 22.3, E = 0.069
*->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-*
C ++ C nG GtC++ ++++C+Cp+ ++ ++C+
KIAA0279 1262 RCTpgVCKNG-----GTCVnllvgGFKCdCPSGDFEKpYCQ 1297
SM00179: domain 2 of 5, from 1263 to 1297: score 21.1, E = 0.0041
*->DiDEC...pCqnGGptgtCiN..vGSYrC.Cpp.Gyt.rnCe<-*
C++++C nGG tC+N vG+++C+Cp + ++++ C+
KIAA0279 1263 ----CtpgVCKNGG---TCVNllVGGFKCdCPSgDFEkPYCQ 1297
SM00282: domain 1 of 2, from 1318 to 1485: score 115.1, E = 7.6e-30
*->t.lsisfsFrTtspnGlLlyag....ggdflaleLvlEDsdgdGrlv
++++ +sF T + +GlLly+g+ ++++df+ale++ + +++
KIAA0279 1318 FhFTLALSFATKERDGLLLYNGrfneKHDFVALEVI------QEQVQ 1358
lrydlGssttggparltsdsdrptplnDGqWHrVsvern...........
l+++ G+ +++++++ p ++DGqWH+V++ +++++ ++++ +
KIAA0279 1359 LTFSAGE----STTTVSPFV--PGGVSDGQWHTVQLKYYnkpllgqtglp 1402
.....grsvtLsVDg....gnpvsges................t.Ldldk
+++++++ ++++VDg +++ + g+ ++ + ++++++++++Ldl+
KIAA0279 1403 qgpseQKVAVVTVDGcdtgVALRFGSVlgnyscaaqgtqggskKsLDLT- 1451
eesgplylGGlPe.....lpvspgFrGCirnlrvngk<-*
gpl lGG+P+ +++ + F+GC+rnl+v+++
KIAA0279 1452 ---GPLLLGGVPDlpesfPVRMRQFVGCMRNLQVDSR 1485
SM00179: domain 3 of 5, from 1505 to 1541: score 28.3, E = 0.00052
*->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
+ C+++ C+nGG tC+N+ ++C+Cp G+ +++C
KIAA0279 1505 KKNVCdsnTCHNGG---TCVNqWDAFSCeCPLGFGgKSCA 1541
SM00181: domain 4 of 6, from 1508 to 1541: score 30.9, E = 0.00018
*->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
C+++ C+nG GtC++ + ++C+Cp G+ g++C
KIAA0279 1508 VCDsnTCHNG-----GTCVnqwdAFSCeCP-LGFGGkSCA 1541
SM00282: domain 2 of 2, from 1567 to 1701: score 95.9, E = 4.8e-24
*->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr
+++++s++FrT++++G+Ll+a ++g + ++l+L+ +G+++l+
KIAA0279 1567 QpWHLSLMFRTRQADGVLLQAItrGRSTITLQLR------EGHVMLS 1607
ydlGssttggparltsdsdrptplnDGqWHrVsvern....grsvtLsVD
++ + +++l+ ++ + nDG WH+ ++ +++ +++ Ls D
KIAA0279 1608 VEGTG---LQASSLRLEP---GRANDGDWHHAQLALGasggPGHAILSFD 1651
ggnpvsges....t.LdldkeesgplylGGlPe..lpvspgFrGCirnlr
+ ++++e + +++ l+ +++ +GG+P + + v gFrGC++++r
KIAA0279 1652 -YGQQRAEGnlgpRlHGLH---LSNITVGGIPGpaGGVARGFRGCLQGVR 1697
vngk<-*
v
KIAA0279 1698 VSDT 1701
SM00179: domain 4 of 5, from 1726 to 1760: score 17.7, E = 0.011
*->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
D C+++pC+ ++ C N+ SY+C+C+pGy++ nC+
KIAA0279 1726 --DPCdsnPCPANS---YCSNdWDSYSCsCDPGYYgDNCT 1760
SM00181: domain 5 of 6, from 1727 to 1760: score 28.1, E = 0.0012
*->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
+C+++pC + C ++ +sy+C+C pGy+g++C
KIAA0279 1727 PCDsnPCPANS-----YCSndwdSYSCsCD-PGYYGdNCT 1760
SM00181: domain 6 of 6, from 1762 to 1798: score 28.8, E = 0.00074
*->eCa..pCsnGgtEqnGtCi.......sytC.CpgpGytg.rCe<-*
C+ +pC++ +C+++++ +++ytC+Cp p y g++Ce
KIAA0279 1762 VCDlnPCEHQS-----VCTrkpsaphGYTCeCP-PNYLGpYCE 1798
SM00179: domain 5 of 5, from 1764 to 1798: score 6.2, E = 0.28
*->DiDECpCqnGGptgtCiN.vG...SYrC.CppGyt.rnCe<-*
D + pC + + +C+ ++ +++Y+C+Cpp y ++ Ce
KIAA0279 1764 DLN--PCEHQS---VCTRkPSaphGYTCeCPPNYLgPYCE 1798
SM00180: domain 1 of 1, from 1855 to 1900: score 54.6, E = 1.2e-11
*->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy.
CdC+ p+G+ ++ Cdp++GqC+ Ckp+++G r+Cd rC + + +
KIAA0279 1855 CDCY---PTGslsrvCDPeDGQCP-CKPGVIG-RQCD--RCDNPFAe 1894
....gC<-*
+++gC
KIAA0279 1895 vttnGC 1900
SM00008: domain 1 of 1, from 1903 to 1965: score 88.2, E = 9.6e-22
*->tdlgCpatwDgiiCWpsTpaGqlvavpCPeyfsgfsnktggNrtqGn
++ Cp++++ +i+Wp+T++G +a+pCP+++ g+
KIAA0279 1903 NYDSCPRAIEAGIWWPRTRFGLPAAAPCPKGSFGT------------ 1937
asRnCtedtGvGgWsepfpgaeSnrtWpnysnCtsndyeelk<-*
a+R+C+e++ gW++ pn++nCts++++elk
KIAA0279 1938 AVRHCDEHR---GWLP-----------PNLFNCTSITFSELK 1965
SM00303: domain 1 of 1, from 2246 to 2299: score 103.1, E = 3.2e-26
*->snpiCvfWdese....tgeWstrGCelvetnkpthttCsCnHLTsFA
++piCvfW++s ++tg+Ws+rGCe+v +n+ +h++C+CnH+TsFA
KIAA0279 2246 TKPICVFWNHSIlvsgTGGWSARGCEVVFRNE-SHVSCQCNHMTSFA 2291
vLmdvspn<-*
vLmdvs++
KIAA0279 2292 VLMDVSRR 2299
//