hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22345664/chunk_1/iprscan-20080501-22345664.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0287 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 348.3 1.2e-101 13 PF00096.16.fs Zinc finger, C2H2 type 330.0 3.8e-96 13 PF02023.7.fs SCAN domain 69.6 4.4e-19 1 PF02023.7.ls SCAN domain 35.0 8.5e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02023.7.ls 1/1 2 71 .. 1 96 [] 35.0 8.5e-09 PF02023.7.fs 1/1 7 71 .. 35 96 .] 69.6 4.4e-19 PF00096.16.fs 1/13 387 409 .. 1 24 [] 25.7 3.7e-05 PF00096.16.ls 1/13 387 409 .. 1 24 [] 27.7 3.9e-05 PF00096.16.fs 2/13 440 462 .. 1 24 [] 28.9 5.8e-06 PF00096.16.ls 2/13 440 462 .. 1 24 [] 30.9 4.1e-06 PF00096.16.ls 3/13 498 520 .. 1 24 [] 26.5 9e-05 PF00096.16.fs 3/13 498 520 .. 1 24 [] 24.5 7.4e-05 PF00096.16.fs 4/13 562 584 .. 1 24 [] 29.8 3.5e-06 PF00096.16.ls 4/13 562 584 .. 1 24 [] 31.8 2.2e-06 PF00096.16.fs 6/13 904 926 .. 1 24 [] 32.4 8.1e-07 PF00096.16.ls 6/13 904 926 .. 1 24 [] 34.3 3.8e-07 PF00096.16.fs 7/13 1042 1064 .. 1 24 [] 27.3 1.5e-05 PF00096.16.ls 7/13 1042 1064 .. 1 24 [] 29.2 1.3e-05 PF00096.16.ls 8/13 1098 1120 .. 1 24 [] 31.9 2e-06 PF00096.16.fs 8/13 1098 1120 .. 1 24 [] 30.0 3.2e-06 PF00096.16.ls 9/13 1160 1182 .. 1 24 [] 26.1 0.00011 PF00096.16.fs 9/13 1160 1182 .. 1 24 [] 24.2 9e-05 PF00096.16.ls 10/13 1217 1239 .. 1 24 [] 25.1 0.00024 PF00096.16.fs 10/13 1217 1239 .. 1 24 [] 23.1 0.00017 PF00096.16.ls 11/13 1267 1289 .. 1 24 [] 29.7 9.7e-06 PF00096.16.fs 11/13 1267 1289 .. 1 24 [] 27.7 1.2e-05 PF00096.16.fs 12/13 1440 1462 .. 1 24 [] 23.4 0.00014 PF00096.16.ls 12/13 1440 1462 .. 1 24 [] 25.3 0.0002 PF00096.16.fs 13/13 1499 1521 .. 1 24 [] 26.7 2.1e-05 PF00096.16.ls 13/13 1499 1521 .. 1 24 [] 28.7 1.9e-05 Alignments of top-scoring domains: PF02023.7.ls: domain 1 of 1, from 2 to 71: score 35.0, E = 8.5e-09 *->pspEifRqrFRqfrYqetsGPrEALsrLReLChqWLrPEvhTKEQIL t+G W +PE++TKE I KIAA0287 2 ----------------QTLG-------------GWVQPETRTKEEII 19 ELLVLEQFLtILPkElQawVqehhPeSgEEaVtLlE...dLerelDepgq ELLVLEQ+LtI P+ l+ wV+ + Pe+ E VtLlE+ +++ + D+ KIAA0287 20 ELLVLEQYLTIIPEKLKPWVRAKKPENCEKLVTLLEnykEMYQPEDDNNS 69 qV<-* V KIAA0287 70 DV 71 PF02023.7.fs: domain 1 of 1, from 7 to 71: score 69.6, E = 4.4e-19 *->WLrPEvhTKEQILELLVLEQFLtILPkElQawVqehhPeSgEEaVtL W +PE++TKE I ELLVLEQ+LtI P+ l+ wV+ + Pe+ E VtL KIAA0287 7 WVQPETRTKEEIIELLVLEQYLTIIPEKLKPWVRAKKPENCEKLVTL 53 lE...dLerelDepgqqV<-* lE+ +++ + D+ V KIAA0287 54 LEnykEMYQPEDDNNSDV 71 PF00096.16.fs: domain 1 of 13, from 387 to 409: score 25.7, E = 3.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sFs s++ H+ +H KIAA0287 387 YVCD-ECGRSFSVISEFVEHQIMH 409 PF00096.16.ls: domain 1 of 13, from 387 to 409: score 27.7, E = 3.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg+sFs s++ H+ +H KIAA0287 387 YVCD-ECGRSFSVISEFVEHQIMH 409 PF00096.16.fs: domain 2 of 13, from 440 to 462: score 28.9, E = 5.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCg++F+ ++ L H+++H KIAA0287 440 FECK-DCGETFNKSAALAEHRKIH 462 PF00096.16.ls: domain 2 of 13, from 440 to 462: score 30.9, E = 4.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ dCg++F+ ++ L H+++H KIAA0287 440 FECK-DCGETFNKSAALAEHRKIH 462 PF00096.16.ls: domain 3 of 13, from 498 to 520: score 26.5, E = 9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C+++F ++s L H+++H KIAA0287 498 YECR-VCKETFLHSSALIEHQKIH 520 PF00096.16.fs: domain 3 of 13, from 498 to 520: score 24.5, E = 7.4e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C +C+++F ++s L H+++H KIAA0287 498 YECR-VCKETFLHSSALIEHQKIH 520 PF00096.16.fs: domain 4 of 13, from 562 to 584: score 29.8, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F ++s+Lk H+++H KIAA0287 562 YECK-VCGETFLHSSSLKEHQKIH 584 PF00096.16.ls: domain 4 of 13, from 562 to 584: score 31.8, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F ++s+Lk H+++H KIAA0287 562 YECK-VCGETFLHSSSLKEHQKIH 584 PF00096.16.fs: domain 6 of 13, from 904 to 926: score 32.4, E = 8.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F ++s+L+ H+++H KIAA0287 904 YECQ-ECGECFAHSSDLTEHQKIH 926 PF00096.16.ls: domain 6 of 13, from 904 to 926: score 34.3, E = 3.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F ++s+L+ H+++H KIAA0287 904 YECQ-ECGECFAHSSDLTEHQKIH 926 PF00096.16.fs: domain 7 of 13, from 1042 to 1064: score 27.3, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCg F + +L+ H+++H KIAA0287 1042 YECE-DCGLGFVDLTDLTDHQKVH 1064 PF00096.16.ls: domain 7 of 13, from 1042 to 1064: score 29.2, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCg F + +L+ H+++H KIAA0287 1042 YECE-DCGLGFVDLTDLTDHQKVH 1064 PF00096.16.ls: domain 8 of 13, from 1098 to 1120: score 31.9, E = 2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg+sF ++s L H+r+H KIAA0287 1098 YECP-KCGESFIHSSFLFEHQRIH 1120 PF00096.16.fs: domain 8 of 13, from 1098 to 1120: score 30.0, E = 3.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+Cp +Cg+sF ++s L H+r+H KIAA0287 1098 YECP-KCGESFIHSSFLFEHQRIH 1120 PF00096.16.ls: domain 9 of 13, from 1160 to 1182: score 26.1, E = 0.00011 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C Cg+ F ++s L+ H+r H KIAA0287 1160 IRCL-LCGQGFIHSSALNEHMRLH 1182 PF00096.16.fs: domain 9 of 13, from 1160 to 1182: score 24.2, E = 9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +C Cg+ F ++s L+ H+r H KIAA0287 1160 IRCL-LCGQGFIHSSALNEHMRLH 1182 PF00096.16.ls: domain 10 of 13, from 1217 to 1239: score 25.1, E = 0.00024 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg+sF ++++L H +H KIAA0287 1217 FECA-VCGESFVNPAELADHVTVH 1239 PF00096.16.fs: domain 10 of 13, from 1217 to 1239: score 23.1, E = 0.00017 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C +Cg+sF ++++L H +H KIAA0287 1217 FECA-VCGESFVNPAELADHVTVH 1239 PF00096.16.ls: domain 11 of 13, from 1267 to 1289: score 29.7, E = 9.7e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgksF ++ L++H+ H KIAA0287 1267 YECK-DCGKSFIHSTVLTKHKELH 1289 PF00096.16.fs: domain 11 of 13, from 1267 to 1289: score 27.7, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ dCgksF ++ L++H+ H KIAA0287 1267 YECK-DCGKSFIHSTVLTKHKELH 1289 PF00096.16.fs: domain 12 of 13, from 1440 to 1462: score 23.4, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C ++F+++ + Hl+tH KIAA0287 1440 YDCH-ECTETFTSSTAFSEHLKTH 1462 PF00096.16.ls: domain 12 of 13, from 1440 to 1462: score 25.3, E = 0.0002 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +C ++F+++ + Hl+tH KIAA0287 1440 YDCH-ECTETFTSSTAFSEHLKTH 1462 PF00096.16.fs: domain 13 of 13, from 1499 to 1521: score 26.7, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F+++ +L rH++tH KIAA0287 1499 FKCD-VCGQLFNDRLSLARHQNTH 1521 PF00096.16.ls: domain 13 of 13, from 1499 to 1521: score 28.7, E = 1.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cg+ F+++ +L rH++tH KIAA0287 1499 FKCD-VCGQLFNDRLSLARHQNTH 1521 //