hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22381585/chunk_1/iprscan-20080501-22381585.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0288 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00850.10.ls Histone deacetylase domain 373.1 4e-109 1 PF00850.10.fs Histone deacetylase domain 371.1 1.6e-108 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00850.10.fs 1/1 666 1011 .. 1 347 [] 371.1 1.6e-108 PF00850.10.ls 1/1 666 1011 .. 1 347 [] 373.1 4e-109 Alignments of top-scoring domains: PF00850.10.fs: domain 1 of 1, from 666 to 1011: score 371.1, E = 1.6e-108 *->tvayvydpevlnyhfktisygagHpenpeRlrlihelLleygllkkm t++ vyd +l++ +t++ + Hpe +R++ i++ L e+gl k+ KIAA0288 666 TTGLVYDTLMLKHQ-CTCGSSSSHPEHAGRIQSIWSRLQETGLRGKC 711 eivtnsqeprkatdeelllvHsedyveflesvsptnlekldkgtNeielk e ++ rkat+eel+ vHse ++ + ++p n++kld+ k KIAA0288 712 ECIR----GRKATLEELQTVHSEAHTLLY-GTNPLNRQKLDS-------K 749 yfn................vgdDtpvfaglye.aaqlsvGgaldaadrll + +++ + + + ++ +v++Dt +++ ++aa+l+vG++++++ +++ KIAA0288 750 KLLgslasvfvrlpcggvgVDSDTIWNEVHSAgAARLAVGCVVELVFKVA 799 egeldiainwagGPgHHAkkgeasGFCylNniAiAIlellkkyPyveRvl gel+++++++++PgHHA+ ++++GFCy+N +A+A++ l++++ v ++l KIAA0288 800 TGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRL-SVSKIL 848 iiDiDvHHGDGTQeiFYnddrVltvSfHkygkGefFPGTieGditeiGkg i+D+DvHHG+GTQ++FY d+ Vl++S+H+y+ G+fFPG+ G ++e+G+g KIAA0288 849 IVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGTG 896 kGkgytlNiPLl....edGtdDesYleafktiiepvleqFkPdaivvsaG G g+++N + ++ +++ ++D++Yl+af+t+++p++ +F Pd+++vs G KIAA0288 897 PGVGFNVNMAFTggldPP-MGDAEYLAAFRTVVMPIASEFAPDVVLVSSG 945 fDalegDptmqLgsfnLTiegygeivrflkslaqkhcdgpllvVlEGGYt fDa eg+p Lg++nL+ +++g+ ++ l+ la +g++++ lEGG + KIAA0288 946 FDAVEGHP-TPLGGYNLSARCFGYLTKQLMGLA----GGRIVLALEGGHD 990 lraiasavarcwialtggllg<-* l ai+ a c+ al+g l+ KIAA0288 991 LTAICDASEACVSALLGNELD 1011 PF00850.10.ls: domain 1 of 1, from 666 to 1011: score 373.1, E = 4e-109 *->tvayvydpevlnyhfktisygagHpenpeRlrlihelLleygllkkm t++ vyd +l++ +t++ + Hpe +R++ i++ L e+gl k+ KIAA0288 666 TTGLVYDTLMLKHQ-CTCGSSSSHPEHAGRIQSIWSRLQETGLRGKC 711 eivtnsqeprkatdeelllvHsedyveflesvsptnlekldkgtNeielk e ++ rkat+eel+ vHse ++ + ++p n++kld+ k KIAA0288 712 ECIR----GRKATLEELQTVHSEAHTLLY-GTNPLNRQKLDS-------K 749 yfn................vgdDtpvfaglye.aaqlsvGgaldaadrll + +++ + + + ++ +v++Dt +++ ++aa+l+vG++++++ +++ KIAA0288 750 KLLgslasvfvrlpcggvgVDSDTIWNEVHSAgAARLAVGCVVELVFKVA 799 egeldiainwagGPgHHAkkgeasGFCylNniAiAIlellkkyPyveRvl gel+++++++++PgHHA+ ++++GFCy+N +A+A++ l++++ v ++l KIAA0288 800 TGELKNGFAVVRPPGHHAEESTPMGFCYFNSVAVAAKLLQQRL-SVSKIL 848 iiDiDvHHGDGTQeiFYnddrVltvSfHkygkGefFPGTieGditeiGkg i+D+DvHHG+GTQ++FY d+ Vl++S+H+y+ G+fFPG+ G ++e+G+g KIAA0288 849 IVDWDVHHGNGTQQAFYSDPSVLYMSLHRYDDGNFFPGS--GAPDEVGTG 896 kGkgytlNiPLl....edGtdDesYleafktiiepvleqFkPdaivvsaG G g+++N + ++ +++ ++D++Yl+af+t+++p++ +F Pd+++vs G KIAA0288 897 PGVGFNVNMAFTggldPP-MGDAEYLAAFRTVVMPIASEFAPDVVLVSSG 945 fDalegDptmqLgsfnLTiegygeivrflkslaqkhcdgpllvVlEGGYt fDa eg+p Lg++nL+ +++g+ ++ l+ la +g++++ lEGG + KIAA0288 946 FDAVEGHP-TPLGGYNLSARCFGYLTKQLMGLA----GGRIVLALEGGHD 990 lraiasavarcwialtggllg<-* l ai+ a c+ al+g l+ KIAA0288 991 LTAICDASEACVSALLGNELD 1011 //