hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22414945/chunk_1/iprscan-20080501-22414945.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0290
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00611.13.fs Fes/CIP4 homology domain                        29.6    3.8e-08   2
PF00611.13.ls Fes/CIP4 homology domain                        31.0      4e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00611.13.fs   1/2      23   109 ..     1   107 []    29.2  5.2e-08
PF00611.13.ls   1/1      23   109 ..     1   107 []    31.0    4e-06

Alignments of top-scoring domains:
PF00611.13.fs: domain 1 of 2, from 23 to 109: score 29.2, E = 5.2e-08
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                        Fw e   + g+++L    ++g  + ++l++F+reRa iEe Y+k 
    KIAA0290    23    EHFWGEK--NHGFEVLYHSVKQGPISTKELADFIRERATIEETYSKA 67   

                   LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls
                   ++klsk                 +    p+ +      w+v++   d l+
    KIAA0290    68 MAKLSKL----------------ASNGTPMGTFA--PLWEVFRVSSDKLA 99   

                   klHsqlseqL<-*
                    +H++l   L   
    KIAA0290   100 LCHLELTRKL    109  

PF00611.13.ls: domain 1 of 1, from 23 to 109: score 31.0, E = 4e-06
                   *->dgFwselnsddgykaLlkrlddglrlledlkkFlreRakiEeeYAkk
                        Fw e   + g+++L    ++g  + ++l++F+reRa iEe Y+k 
    KIAA0290    23    EHFWGEK--NHGFEVLYHSVKQGPISTKELADFIRERATIEETYSKA 67   

                   LqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvllsetdqls
                   ++klsk                 +    p+ +      w+v++   d l+
    KIAA0290    68 MAKLSKL----------------ASNGTPMGTFA--PLWEVFRVSSDKLA 99   

                   klHsqlseqL<-*
                    +H++l   L   
    KIAA0290   100 LCHLELTRKL    109  

//