hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22432698/chunk_1/iprscan-20080501-22432698.nocrc
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Query sequence: KIAA0291
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01302.15.ls CAP-Gly domain                                 277.2      3e-80   2
PF01302.15.fs CAP-Gly domain                                 273.4    4.1e-79   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01302.15.fs   1/2      94   159 ..     1    74 []   131.3  2.4e-36
PF01302.15.ls   1/2      94   159 ..     1    74 []   133.2  6.6e-37
PF01302.15.fs   2/2     234   299 ..     1    74 []   142.1  1.4e-39
PF01302.15.ls   2/2     234   299 ..     1    74 []   144.0  3.8e-40

Alignments of top-scoring domains:
PF01302.15.fs: domain 1 of 2, from 94 to 159: score 131.3, E = 2.4e-36
                   *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN
                      +G+RV+v+g    +++G+V Y Get+fapG+  W+GV+LD+P+ GKN
    KIAA0291    94    VGERVWVNG----VKPGVVQYLGETQFAPGQ--WAGVVLDDPV-GKN 133  

                   DGsvkGvrYFqCegpkyGiFvrpskve<-*
                   DG v+GvrYF+C+   +GiF rpsk++   
    KIAA0291   134 DGAVGGVRYFECP-ALQGIFTRPSKLT    159  

PF01302.15.ls: domain 1 of 2, from 94 to 159: score 133.2, E = 6.6e-37
                   *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN
                      +G+RV+v+g    +++G+V Y Get+fapG+  W+GV+LD+P+ GKN
    KIAA0291    94    VGERVWVNG----VKPGVVQYLGETQFAPGQ--WAGVVLDDPV-GKN 133  

                   DGsvkGvrYFqCegpkyGiFvrpskve<-*
                   DG v+GvrYF+C+   +GiF rpsk++   
    KIAA0291   134 DGAVGGVRYFECP-ALQGIFTRPSKLT    159  

PF01302.15.fs: domain 2 of 2, from 234 to 299: score 142.1, E = 1.4e-39
                   *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN
                      +G+RV+vgg    +++G+VRYvGetdfa+G+  W+GVELDePl GKN
    KIAA0291   234    LGDRVLVGG----TKTGVVRYVGETDFAKGE--WCGVELDEPL-GKN 273  

                   DGsvkGvrYFqCegpkyGiFvrpskve<-*
                   DG v G+rYFqC+ pk+G+F+++ kv    
    KIAA0291   274 DGAVAGTRYFQCP-PKFGLFAPIHKVI    299  

PF01302.15.ls: domain 2 of 2, from 234 to 299: score 144.0, E = 3.8e-40
                   *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN
                      +G+RV+vgg    +++G+VRYvGetdfa+G+  W+GVELDePl GKN
    KIAA0291   234    LGDRVLVGG----TKTGVVRYVGETDFAKGE--WCGVELDEPL-GKN 273  

                   DGsvkGvrYFqCegpkyGiFvrpskve<-*
                   DG v G+rYFqC+ pk+G+F+++ kv    
    KIAA0291   274 DGAVAGTRYFQCP-PKFGLFAPIHKVI    299  

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