# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hf00341mrp1.fasta.huge -Q ../query/KIAA0298.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0298, 901 aa
 vs ./tmplib.23147 library

1986604 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 15.2908+/-0.0123; mu= -32.5596+/- 0.827
 mean_var=739.7095+/-176.553, 0's: 0 Z-trim: 7  B-trim: 0 in 0/40
 Lambda= 0.047157

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1113  ( 1131 res)   hj06379(revised)           (1131)  843 73.0 2.1e-13


>>KIAA1113  ( 1131 res)   hj06379(revised)                (1131 aa)
 initn: 776 init1: 666 opt: 843  Z-score: 332.4  bits: 73.0 E(): 2.1e-13
Smith-Waterman score: 851;  29.928% identity (62.366% similar) in 558 aa overlap (3-537:182-722)

                                           10        20        30  
KIAA02                             CELISCPGCERVYLTRDVTEHFFLHCVPTEQP
                                     .: :: :..     :.....:.. . .: :
KIAA11 SFCLRCLPEPERQLSVPIPGGSNGDIQQVGVIRCPVCRQECRQIDLVDNYFVKDT-SEAP
             160       170       180       190       200        210

                  40        50        60        70        80       
KIAA02 -----KMARNCSECKEKRAAHILCTYCNRWLCSSCTEEHRHSPVPGGPFFPRAQKGSPGV
            :  . :. :... .:  .:. :..:::..: : :..       .. . .  : .:
KIAA11 SSSDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKFTKDHLIRKKEDVSESV
              220       230       240       250       260       270

        90       100       110       120       130       140       
KIAA02 NGGPGDFTLYCPLHTQEVLKLFCETCDMLTCHSCLVVEHKEHRCRHVEEVLQNQRMLLEG
        :. :.  ..::.: :: ::::::::: :::..: ..:::::: . .::..:::.  .:.
KIAA11 -GASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQFLEEAFQNQKGAIEN
               280       290       300       310       320         

       150       160       170       180       190       200       
KIAA02 VTTQVAHKKSSLQTSAKQIEDRIFEVKHQHRKVENQIKMAKMVLMNELNKQANGLIEELE
       . ... .::. .. .: :...:: ::.. ...::..::.: ..:.::.::....:...::
KIAA11 LLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKSLLQQLE
     330       340       350       360       370       380         

       210       220       230       240       250       260       
KIAA02 GITNERKRKLEQQLQSIMVLNRQFEHVQNFINWAVCSKTSVPFLFSKELIVFQMQRLLET
       ..:.::. :: :: ..:  :.:: .::.:: :::. : .:. .:.::.::.::....:..
KIAA11 NVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQLRHILKA
     390       400       410       420       430       440         

       270       280       290       300       310         320     
KIAA02 SCNTDPGSPWSIRFTWEPNFWTKQLASLGCITTEGGQMSRADAPAYGG--LQGSSPFYQS
        :.  :..  .:::  .:.::.:....:: .. :.       ::.:    . :. :   .
KIAA11 RCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIES-----KPAPGYTPNVVVGQVPPGTN
     450       460       470       480            490       500    

         330       340       350           360           370       
KIAA02 HQSPVAQQEALSHPSHKFQSPAVCSSS----VCCSHCSPVSP----SLKGQVPPPSIHPA
       : : .  :  :..   . ..  : ...          .: .:    .   :  : .  : 
KIAA11 HISKTPGQINLAQLRLQHMQQQVYAQKHQQLQQMRMQQPPAPVPTTTTTTQQHPRQAAPQ
          510       520       530       540       550       560    

       380          390       400           410       420       430
KIAA02 HSFRQPPEMVP---QQLGSLQCSALLPREKELACS----PHPPKLLQPWLETQPPVEQES
          .:::...    .: :...:.:.  .. .:: .    :  :.   :    . :  :..
KIAA11 MLQQQPPRLISVQTMQRGNMNCGAFQAHQMRLAQNAARIPGIPRHSGPQYSMMQPHLQRQ
          570       580       590       600       610       620    

              440       450       460       470       480       490
KIAA02 TSQRLGQQLTSQPVCIVPPQDVQQGAHAQPTLQTPSIQVQFGHHQKLKLSHFQQQPQQQL
        :.  :.   . :  .:  ...  .  ..::  : . ... :  .  ... ..  :.   
KIAA11 HSNP-GH---AGPFPVVSVHNTTINP-TSPTTATMA-NANRGPTSP-SVTAIELIPSVTN
           630          640        650        660        670       

              500        510       520       530       540         
KIAA02 PPPPPPLPHPPP-PLPPPPQQPHPPLPPSQHLASSQHESPPGPACSQNMDIMHHKFELEE
       :   : ::  ::  :    ..    :  :.....:.   :: :. ..:            
KIAA11 PENLPSLPDIPPIQLEDAGSSSLDNLL-SRYISGSHL--PPQPTSTMNPSPGPSALSPGS
       680       690       700        710         720       730    

     550       560       570       580       590       600         
KIAA02 MQKDLELLLQAQQPSLQLSQTKSPQHLQQTIVGQINYIVRQPAPVQSQSQEETLQATDEP
                                                                   
KIAA11 SGLSNSHTPVRPPSTSSTGSRGSCGSSGRTAEKTSLSFKSDQVKVKQEPGTEDEICSFSG
          740       750       760       770       780       790    




901 residues in 1 query   sequences
1986604 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:15:09 2008 done: Thu Dec 18 15:15:10 2008
 Total Scan time:  0.650 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]