hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22551606/chunk_1/iprscan-20080501-22551606.nocrc
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Query sequence: KIAA0298
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00502                                                 146.0    3.9e-39   1
SM00336                                                  33.4    3.1e-05   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00336    1/2      33    71 ..     1    51 []     9.4     0.65
SM00336    2/2      93   134 ..     1    51 []    24.0    0.021
SM00502    1/1     141   267 ..     1   132 []   146.0  3.9e-39

Alignments of top-scoring domains:
SM00336: domain 1 of 2, from 33 to 71: score 9.4, E = 0.65
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      + a+ C+e++ ++ a++ C   +  +lC  C+e+  H         r
    KIAA0298    33    KMARNCSECKEKRAAHILC-TYCNRWLCSSCTEE--H---------R 67   

                   vvll<-*
                    +++   
    KIAA0298    68 HSPV    71   

SM00336: domain 2 of 2, from 93 to 134: score 24.0, E = 0.021
                   *->eraplCeeHgdeepaeffCveedgallCrdCdeageHqanklfrgHr
                      +  ++C+ H   e++++fC e++++l C  C  + eH      + Hr
    KIAA0298    93    DFTLYCPLHT-QEVLKLFC-ETCDMLTCHSCLVV-EH------KEHR 130  

                   vvll<-*
                    + +   
    KIAA0298   131 CRHV    134  

SM00502: domain 1 of 1, from 141 to 267: score 146.0, E = 3.9e-39
                   *->qreaLeelleklrkkaeelekalkqldsiiqevegGqvdenaeevea
                      qr+ Le + +++ +k++ l+ ++kq++++i ev+     +++++ve+
    KIAA0298   141    QRMLLEGVTTQVAHKKSSLQTSAKQIEDRIFEVK-----HQHRKVEN 182  

                   eikaafdeLrnaLnerkkqLledLeevkenklkkLeqQlesltqkqekle
                   +ik+a + L+n+Ln++ + L+e+Le +++++++kLeqQl+s++++++++e
    KIAA0298   183 QIKMAKMVLMNELNKQANGLIEELEGITNERKRKLEQQLQSIMVLNRQFE 232  

                   hainfaeeaLnsgdptelLlskkliierlqellkq<-*
                   h++nf+++a++s+++  +L+sk+li++++q+ll+    
    KIAA0298   233 HVQNFINWAVCSKTSVPFLFSKELIVFQMQRLLET    267  

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