hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-22583295/chunk_1/iprscan-20080501-22583295.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0300 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 241.6 1.6e-69 5 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 238.2 1.6e-68 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.fs 2/6 342 424 .. 1 86 [] 63.6 3.2e-17 PF00595.14.ls 1/5 342 424 .. 1 86 [] 65.6 1.5e-16 PF00595.14.ls 2/5 594 678 .. 1 86 [] 59.9 7.6e-15 PF00595.14.fs 3/6 594 678 .. 1 86 [] 57.9 1.3e-15 PF00595.14.ls 3/5 736 819 .. 1 86 [] 30.8 4.6e-06 PF00595.14.fs 4/6 736 819 .. 1 86 [] 28.8 2e-07 PF00595.14.fs 5/6 2630 2692 .. 1 66 [. 24.3 3.7e-06 PF00595.14.ls 4/5 2630 2712 .. 1 86 [] 22.5 0.0014 PF00595.14.fs 6/6 2758 2841 .. 1 86 [] 60.8 1.9e-16 PF00595.14.ls 5/5 2758 2841 .. 1 86 [] 62.8 1e-15 Alignments of top-scoring domains: PF00595.14.fs: domain 2 of 6, from 342 to 424: score 63.6, E = 3.2e-17 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr ++ l k + glG++++gg + +++ + i+v+ v +G gaA+++Gr KIAA0300 342 KMELLK--ESDGLGIQVSGGRGSKRsPHAIVVTQVKEG-GAAHRDGR 385 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L GD +l +NG l++lsheeav++l+++ g v+L+v+ KIAA0300 386 LSLGDELLVINGHLLVGLSHEEAVAILRSATG-MVQLVVA 424 PF00595.14.ls: domain 1 of 5, from 342 to 424: score 65.6, E = 1.5e-16 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr ++ l k + glG++++gg + +++ + i+v+ v +G gaA+++Gr KIAA0300 342 KMELLK--ESDGLGIQVSGGRGSKRsPHAIVVTQVKEG-GAAHRDGR 385 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L GD +l +NG l++lsheeav++l+++ g v+L+v+ KIAA0300 386 LSLGDELLVINGHLLVGLSHEEAVAILRSATG-MVQLVVA 424 PF00595.14.ls: domain 2 of 5, from 594 to 678: score 59.9, E = 7.6e-15 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr + l ke k+ glGfsi+gg d++++++gifv+ + p+ g+A+ +Gr KIAA0300 594 IIGLYKE-KGKGLGFSIAGGRDCIRgQMGIFVKTIFPN-GSAAEDGR 638 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L++GD Il vNG ++ +l+ ea+ k+++++ Ltv+ KIAA0300 639 LKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVR 678 PF00595.14.fs: domain 3 of 6, from 594 to 678: score 57.9, E = 1.3e-15 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr + l ke k+ glGfsi+gg d++++++gifv+ + p+ g+A+ +Gr KIAA0300 594 IIGLYKE-KGKGLGFSIAGGRDCIRgQMGIFVKTIFPN-GSAAEDGR 638 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* L++GD Il vNG ++ +l+ ea+ k+++++ Ltv+ KIAA0300 639 LKEGDEILDVNGIPIKGLTFQEAIHTFKQIRSGLFVLTVR 678 PF00595.14.ls: domain 3 of 5, from 736 to 819: score 30.8, E = 4.6e-06 *->evtlekedkrgglGf...sikggsdkgadkgifvsevlpGsgaAeag evtl ke r glG++ ++ +++ +gi++ ++ pG + A+ KIAA0300 736 EVTLNKE-PRVGLGIgacCLALENSP---PGIYIHSLAPG-SVAKME 777 GrLqaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* + L GDqIl+vN ++++ ++ + +v a+ +++ +++v+L++ KIAA0300 778 SNLSRGDQILEVNSVNVR-HAALSKVHAILSKCPpGPVRLVIG 819 PF00595.14.fs: domain 4 of 6, from 736 to 819: score 28.8, E = 2e-07 *->evtlekedkrgglGf...sikggsdkgadkgifvsevlpGsgaAeag evtl ke r glG++ ++ +++ +gi++ ++ pG + A+ KIAA0300 736 EVTLNKE-PRVGLGIgacCLALENSP---PGIYIHSLAPG-SVAKME 777 GrLqaGDqIlsvNGqdlenlsheeavlalkgsgg.sevtLtvl<-* + L GDqIl+vN ++++ ++ + +v a+ +++ +++v+L++ KIAA0300 778 SNLSRGDQILEVNSVNVR-HAALSKVHAILSKCPpGPVRLVIG 819 PF00595.14.fs: domain 5 of 6, from 2630 to 2692: score 24.3, E = 3.7e-06 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++l + +++glGfs++gg+d + k+i v +v gaA + G KIAA0300 2630 FIVLNRK-EGSGLGFSVAGGTDVE-PKSITVHRVFSQ-GAASQEGTM 2673 qaGDqIlsvNGqdlenlsh<-* + GD +lsvNG +l++l+h KIAA0300 2674 NRGDFLLSVNGASLAGLAH 2692 PF00595.14.ls: domain 4 of 5, from 2630 to 2712: score 22.5, E = 0.0014 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++l + +++glGfs++gg+d + k+i v +v gaA + G KIAA0300 2630 FIVLNRK-EGSGLGFSVAGGTDVE-PKSITVHRVFSQ-GAASQEGTM 2673 qaGDqIlsvNGqdlenlsheeavlalkgsggsevt...Ltvl<-* + GD +lsvNG +l++l+h + ++l ++ +++++ L+v+ KIAA0300 2674 NRGDFLLSVNGASLAGLAHGNVLKVLHQA---QLHkdaLVVI 2712 PF00595.14.fs: domain 6 of 6, from 2758 to 2841: score 60.8, E = 1.9e-16 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr v + k + glG+s++gg++ +d ++++++v +G gaAe++G KIAA0300 2758 CVEVLK--TSAGLGLSLDGGKSSVTgDGPLVIKRVYKG-GAAEQAGI 2801 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++aGD Il++NG++l++l h +a ++k+ ++++v+L+++ KIAA0300 2802 IEAGDEILAINGKPLVGLMHFDAWNIMKSVPEGPVQLLIR 2841 PF00595.14.ls: domain 5 of 5, from 2758 to 2841: score 62.8, E = 1e-15 *->evtlekedkrgglGfsikggsdkga.dkgifvsevlpGsgaAeagGr v + k + glG+s++gg++ +d ++++++v +G gaAe++G KIAA0300 2758 CVEVLK--TSAGLGLSLDGGKSSVTgDGPLVIKRVYKG-GAAEQAGI 2801 LqaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++aGD Il++NG++l++l h +a ++k+ ++++v+L+++ KIAA0300 2802 IEAGDEILAINGKPLVGLMHFDAWNIMKSVPEGPVQLLIR 2841 //