hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-22583295/chunk_1/iprscan-20080501-22583295.nocrc
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Query sequence: KIAA0300
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                 360.8   8.4e-104   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/6      89   187 ..     1    80 []    24.3    0.017
SM00228    2/6     350   427 ..     1    80 []    77.2  2.1e-18
SM00228    3/6     603   681 ..     1    80 []    75.1  8.4e-18
SM00228    4/6     743   822 ..     1    80 []    50.5  2.1e-10
SM00228    5/6    2639  2715 ..     1    80 []    52.8  4.5e-11
SM00228    6/6    2766  2844 ..     1    80 []    80.9  1.5e-19

Alignments of top-scoring domains:
SM00228: domain 1 of 6, from 89 to 187: score 24.3, E = 0.017
                   *->gglGfsivg............................gifvssvvpG
                      +  G+s    +  ++ ++++++++++++++++  + ++i v+++ ++
    KIAA0300    89    ETVGLSFGNipvfgdygekrrggkkrkthqgpvldvgCIWVTELRKN 135  

                   spAakaGrkslglLkvGDvIleVNGetsvegltheeavdllkkaggggvG
                   spA k+G+     ++  D+Il+ NG + + g++   a  l  ++ +   G
    KIAA0300   136 SPAGKSGK-----VRLRDEILSLNG-QLMVGVDVSGASYLAEQCWN---G 176  

                   ekvtLtvlRgg<-*
                     + L+ lR+    
    KIAA0300   177 GFIYLIMLRRF    187  

SM00228: domain 2 of 6, from 350 to 427: score 77.2, E = 2.1e-18
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                       glG++++g+++++++++ i+v++v++G++A+++Gr     L  GD+
    KIAA0300   350    DGLGIQVSGgrgskrsphAIVVTQVKEGGAAHRDGR-----LSLGDE 391  

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +l +NG   + gl+heeav++l++a g      v+L+v  ++   
    KIAA0300   392 LLVING-HLLVGLSHEEAVAILRSATG-----MVQLVVASKE    427  

SM00228: domain 3 of 6, from 603 to 681: score 75.1, E = 8.4e-18
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                      +glGfsi+g+++  +++ gifv+ ++p++ Aa +Gr     Lk+GD+
    KIAA0300   603    KGLGFSIAGgrdcirgqmGIFVKTIFPNGSAAEDGR-----LKEGDE 644  

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   Il VNG ++++glt +ea+   k+ + g      +Ltv+ +    
    KIAA0300   645 ILDVNG-IPIKGLTFQEAIHTFKQIRSG----LFVLTVRTKL    681  

SM00228: domain 4 of 6, from 743 to 822: score 50.5, E = 2.1e-10
                   *->gglGfsivg..........gifvssvvpGspAakaGrkslglLkvGD
                      +  G+ i       +++++gi++ s+ pGs+A    +     L  GD
    KIAA0300   743    PRVGLGIGAcclalensppGIYIHSLAPGSVAKMESN-----LSRGD 784  

                   vIleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +IleVN  ++v+ +    + ++l k+++g    +v+L++ R +   
    KIAA0300   785 QILEVNS-VNVRHAALSKVHAILSKCPPG----PVRLVIGRHP    822  

SM00228: domain 5 of 6, from 2639 to 2715: score 52.8, E = 4.5e-11
                   *->gglGfsivg.......gifvssvvpGspAakaGrkslglLkvGDvIl
                       glGfs++g+++ +++ i v +v+  ++A++ G+     +  GD +l
    KIAA0300  2639    SGLGFSVAGgtdvepkSITVHRVFSQGAASQEGT-----MNRGDFLL 2680 

                   eVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   +VNG  s+ gl h  ++++l +a+      k  L+v+++g   
    KIAA0300  2681 SVNG-ASLAGLAHGNVLKVLHQAQL----HKDALVVIKKG    2715 

SM00228: domain 6 of 6, from 2766 to 2844: score 80.9, E = 1.5e-19
                   *->gglGfsivg.........gifvssvvpGspAakaGrkslglLkvGDv
                      +glG+s+ g++++ ++++++++++v++G++A++aG      + +GD+
    KIAA0300  2766    AGLGLSLDGgkssvtgdgPLVIKRVYKGGAAEQAGI-----IEAGDE 2807 

                   IleVNGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   Il++NG +++ gl h +a +++k+ ++g    +v+L++++     
    KIAA0300  2808 ILAING-KPLVGLMHFDAWNIMKSVPEG----PVQLLIRKHR    2844 

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