# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hf00402s1.fasta.huge -Q ../query/KIAA0301.ptfa ./tmplib.23147 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0301, 3210 aa vs ./tmplib.23147 library 1984295 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 10.6290+/-0.00812; mu= -10.9709+/- 0.544 mean_var=303.3661+/-77.715, 0's: 0 Z-trim: 12 B-trim: 85 in 2/38 Lambda= 0.073636 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 46, opt: 34, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0741 ( 1222 res) hk04024 (1222) 240 41.4 0.0028 >>KIAA0741 ( 1222 res) hk04024 (1222 aa) initn: 269 init1: 106 opt: 240 Z-score: 150.7 bits: 41.4 E(): 0.0028 Smith-Waterman score: 292; 23.465% identity (52.756% similar) in 635 aa overlap (2305-2872:17-624) 2280 2290 2300 2310 2320 2330 KIAA03 MEDSAGEGATEFHDYEGGGIGEGEGMKDVSDQIGNEEQVEDTFQKGQEKDKEDPDSKSDI :.: . . . : :..: ::. KIAA07 QAMGKKQKNKSEDSTKDDIDLDALAAEIEGAGAAKEQEPQKSKGKK 10 20 30 40 2340 2350 2360 2370 2380 2390 KIAA03 KGEDNAIEMSEDFDGKMHDG-ELEEQEEDDEKSDSEGGDLDKHMGDLNGEEADKLDERLW : : . ...:: : .: :: : :.: : . . . : :: . :.. KIAA07 KKEKKKQDFDEDDILKELEGLSLEAQ---GIKADRE--TVAVKPTENNEEEFTSKDKKKK 50 60 70 80 90 100 2400 2410 2420 2430 KIAA03 G--------DDDEEEDEEEEDNKTEETG-P------GMDEEDS-ELVAKDDNLDSGNSNK : ::.. :. :..:.:...:. : : :..:. . . : . . .::: KIAA07 GQKGKKQSFDDNDSEELEDKDSKSKKTAKPKVEMYSGSDDDDDFNKLPKKAKGKAQKSNK 110 120 130 140 150 160 2440 2450 2460 2470 2480 2490 KIAA03 --DKSQQDK---KEEKEEAEADDGGQGEDKINEQIDERDYDENEVDPYHGNQEKVPEPEA : :..:. :. ::... ...:.. :. .: .. : ... ::.. : :. KIAA07 KWDGSEEDEDNSKKIKERSRINSSGESGDESDEFLQSRKGQKK-------NQKNKPGPNI 170 180 190 200 210 2500 2510 2520 2530 2540 2550 KIAA03 LDLPDDLNLDSEDKNGGEDTDNEEGEEENPLEIKEKPEEAGH--EAEERGETETDQNESQ . .: .: . : .. :.. : :.. :: .. . .:. : :: ... : KIAA07 ESGNED-----DDASFKIKTVAQKKAEKKERERKKRDEEKAKLRKLKEKEELETGKKD-Q 220 230 240 250 260 2560 2570 2580 2590 2600 KIAA03 SPQEPEEGPSEDDKAEGEEEMDTGADDQDGDAAQHP---EEHSEEQQQSVEEKDKEADEE : :. . :.. .... .:::. . . :. : :. .: .... ..: :....: KIAA07 SKQKESQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKDKKKKKGEKE 270 280 290 300 310 320 2610 2620 2630 2640 2650 KIAA03 GGEN----GPAD---QGFQP-----QEEEEREDSDTEEQVP--EALE--RKEHASCGQTG :. ::. ...: .:::::. . ::.. : :: :::. : KIAA07 EKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERLEQEK 330 340 350 360 370 380 2660 2670 2680 2690 2700 2710 KIAA03 VENMQNTQAMELAGAAPEKEQGKEEHGSGAADANQAEGHESNFIAQLASQKHTRKNTQSF : .. . .::. :.: . . .:... . : .: . .:. KIAA07 RERKKQKEK-------ERKERLKKEGKLLTKSQREARARAEATLKLLQAQGVEVPSKDSL 390 400 410 420 430 440 2720 2730 2740 2750 2760 KIAA03 -KRKPGQADNERSMGDH---NERVHKRLRTVDTDSHAEQG-PAQQ---PQAQVEDADAFE :..: :..:. . ...: . .. . ::: : .. : .. :. . : KIAA07 PKKRPIYEDKKRKKIPQQLESKEVSESMELCAAVEVMEQGVPEKEETPPPVEPEEEEDTE 450 460 470 480 490 500 2770 2780 2790 2800 2810 KIAA03 HIKQGSD-----AYDAQTYDVASKEQQQSAKDSGKDQEEEEIE---DTLMDTEEQEEFKA : : : : .: : ... . .:.. ...:::: : : . ::.:: .. KIAA07 DA--GLDDWEAMASDEETEKVEGNKVHIEVKENPEEEEEEEEEEEEDEESEEEEEEEGES 510 520 530 540 550 2820 2830 2840 2850 2860 KIAA03 ADVE-QLKPEEIKSGTTAPLGFDEMEVEIQTVKTEEDQDP-RT------DKAHKETENEK : . . :.... . .:. . .. .: :.: :: :::... :... KIAA07 EGSEGDEEDEKVSDEKDSGKTLDKKPSKEMSSDSEYDSDDDRTKEERAYDKAKRRIEKRR 560 570 580 590 600 610 2870 2880 2890 2900 2910 2920 KIAA03 PERSRESTIHTAHQFLMDTIFQPFLKDVNELRQELERQLEMWQPRESGNPEEEKVAAEMW :.:. KIAA07 LEHSKNVNTEKLRAPIICVLGHVDTGKTKILDKLRHTHVQDGEAGGITQQIGATNVPLEA 620 630 640 650 660 670 3210 residues in 1 query sequences 1984295 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:15:17 2008 done: Thu Dec 18 15:15:18 2008 Total Scan time: 1.430 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]