hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23112339/chunk_1/iprscan-20080501-23112339.nocrc
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Query sequence: KIAA0306
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00505.9.fs HMG (high mobility group) box                   71.9    1.4e-19   1
PF00505.9.ls HMG (high mobility group) box                   73.9    4.6e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00505.9.fs   1/1      43   111 ..     1    69 []    71.9  1.4e-19
PF00505.9.ls   1/1      43   111 ..     1    69 []    73.9  4.6e-19

Alignments of top-scoring domains:
PF00505.9.fs: domain 1 of 1, from 43 to 111: score 71.9, E = 1.4e-19
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      ++RP++AF++f++ +Ra +++ +P+  n  +sk+lGe W aL ++eK
    KIAA0306    43    IRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEK 89   

                   apYeakAekeKarYekempeYk<-*
                   ++Y ++A   K+ + k++p++k   
    KIAA0306    90 QKYHDLAFQVKEAHFKAHPDWK    111  

PF00505.9.ls: domain 1 of 1, from 43 to 111: score 73.9, E = 4.6e-19
                   *->PKRPlsAFflfrqeqRakikaenPglsnaeIskklGekWkaLseeeK
                      ++RP++AF++f++ +Ra +++ +P+  n  +sk+lGe W aL ++eK
    KIAA0306    43    IRRPMNAFMIFSKRHRALVHQRHPNQDNRTVSKILGEWWYALGPKEK 89   

                   apYeakAekeKarYekempeYk<-*
                   ++Y ++A   K+ + k++p++k   
    KIAA0306    90 QKYHDLAFQVKEAHFKAHPDWK    111  

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