hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23261303/chunk_1/iprscan-20080501-23261303.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0313 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00617.10.ls RasGEF domain 194.8 1.8e-55 1 PF00617.10.fs RasGEF domain 193.0 6.5e-55 1 PF00618.10.fs Guanine nucleotide exchange factor for R 85.9 1.9e-24 1 PF00618.10.ls Guanine nucleotide exchange factor for R 87.6 3.4e-23 1 PF00788.13.ls Ras association (RalGDS/AF-6) domain 76.1 1e-19 1 PF00788.13.fs Ras association (RalGDS/AF-6) domain 74.2 3.7e-19 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 47.2 1.4e-12 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 48.3 2.4e-11 1 PF00027.19.fs Cyclic nucleotide-binding domain 24.5 2e-06 1 PF00027.19.ls Cyclic nucleotide-binding domain 26.4 9.6e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00027.19.fs 1/1 163 249 .. 1 98 [] 24.5 2e-06 PF00027.19.ls 1/1 163 249 .. 1 98 [] 26.4 9.6e-05 PF00618.10.ls 1/1 279 366 .. 1 109 [] 87.6 3.4e-23 PF00618.10.fs 1/1 279 366 .. 1 109 [] 85.9 1.9e-24 PF00595.14.ls 1/1 396 473 .. 1 86 [] 48.3 2.4e-11 PF00595.14.fs 1/1 419 473 .. 28 86 .] 47.2 1.4e-12 PF00788.13.ls 1/1 615 701 .. 1 97 [] 76.1 1e-19 PF00788.13.fs 1/1 615 701 .. 1 97 [] 74.2 3.7e-19 PF00617.10.ls 1/1 723 908 .. 1 227 [] 194.8 1.8e-55 PF00617.10.fs 1/1 723 908 .. 1 227 [] 193.0 6.5e-55 Alignments of top-scoring domains: PF00027.19.fs: domain 1 of 1, from 163 to 249: score 24.5, E = 2e-06 *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp + ++G++++ G++ ds+ ++l G+v+v+++d++ + il KIAA0313 163 AVVERAGTIVLNDGEELDSWSVILNGSVEVTYpDGKAE-----ILCM 204 GdffGelallggendspSrhaprsatvvA.ltdsellvipredflellee G fG + ++ e + +++++d++ ++i ++d ++l + KIAA0313 205 GNSFGVSPTMDKE--------YMKGVMRTkVDDCQFVCIAQQDYCRILNQ 246 dpe<-* + KIAA0313 247 VEK 249 PF00027.19.ls: domain 1 of 1, from 163 to 249: score 26.4, E = 9.6e-05 *->lrsfkkGevifreGdpadslYivlsGkvkvyk.dedgreqilgilgp + ++G++++ G++ ds+ ++l G+v+v+++d++ + il KIAA0313 163 AVVERAGTIVLNDGEELDSWSVILNGSVEVTYpDGKAE-----ILCM 204 GdffGelallggendspSrhaprsatvvA.ltdsellvipredflellee G fG + ++ e + +++++d++ ++i ++d ++l + KIAA0313 205 GNSFGVSPTMDKE--------YMKGVMRTkVDDCQFVCIAQQDYCRILNQ 246 dpe<-* + KIAA0313 247 VEK 249 PF00618.10.ls: domain 1 of 1, from 279 to 366: score 87.6, E = 3.4e-23 *->qvkagtlekLvehLtshskl.DssFvstFLlTYRsFt.tpaeLlekL v gt e+L hL+ +++ D++F+++FLlTYR+F ++p e+ +kL KIAA0313 279 IVIKGTSERLTMHLVEEHSVvDPTFIEDFLLTYRTFLsSPMEVGKKL 325 ieRywseipppnlqssknsweekkkllkpiqlrvlnvlrhWvenyfeDFa +e++ + + + +v +v+ Wv+n+f+DF KIAA0313 326 LEWF--ND-------------------PSLRDKVTRVVLLWVNNHFNDF- 353 deddpellsrLleF<-* e dp+++ +L+eF KIAA0313 354 -EGDPAMTRFLEEF 366 PF00618.10.fs: domain 1 of 1, from 279 to 366: score 85.9, E = 1.9e-24 *->qvkagtlekLvehLtshskl.DssFvstFLlTYRsFt.tpaeLlekL v gt e+L hL+ +++ D++F+++FLlTYR+F ++p e+ +kL KIAA0313 279 IVIKGTSERLTMHLVEEHSVvDPTFIEDFLLTYRTFLsSPMEVGKKL 325 ieRywseipppnlqssknsweekkkllkpiqlrvlnvlrhWvenyfeDFa +e++ + + + +v +v+ Wv+n+f+DF KIAA0313 326 LEWF--ND-------------------PSLRDKVTRVVLLWVNNHFNDF- 353 deddpellsrLleF<-* e dp+++ +L+eF KIAA0313 354 -EGDPAMTRFLEEF 366 PF00595.14.ls: domain 1 of 1, from 396 to 473: score 48.3, E = 2.4e-11 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL ++t++ + +l f + ggs+kg gifv +v Gs a eag L KIAA0313 396 TLTKPS--REAPLPFILLGGSEKG--FGIFVDSVDSGSKATEAG--L 436 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* + GDqIl+vNGq++en+++ +a+++l++ +++tv+ KIAA0313 437 KRGDQILEVNGQNFENIQLSKAMEILRNNT--HLSITVK 473 PF00595.14.fs: domain 1 of 1, from 419 to 473: score 47.2, E = 1.4e-12 *->gifvsevlpGsgaAeagGrLqaGDqIlsvNGqdlenlsheeavlalk gifv +v Gs a eag L+ GDqIl+vNGq++en+++ +a+++l+ KIAA0313 419 GIFVDSVDSGSKATEAG--LKRGDQILEVNGQNFENIQLSKAMEILR 463 gsggsevtLtvl<-* + +++tv+ KIAA0313 464 NNT--HLSITVK 473 PF00788.13.ls: domain 1 of 1, from 615 to 701: score 76.1, E = 1e-19 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe + vlrV++ d++ ++ i++sk+tTa+eV+ ++ r f + + +p+ KIAA0313 615 PDQVLRVFKADQQ---SRYIMISKDTTAKEVVIQAIREFAV-TATPD 657 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred y+L+Evs+ e +++r +Lpd+ l + ql ++r++L+++ + KIAA0313 658 QYSLCEVSVTPEGVIKQR-RLPDQLSKLADRIQL-----SGRYYLKNNME 701 <-* KIAA0313 - - PF00788.13.fs: domain 1 of 1, from 615 to 701: score 74.2, E = 3.7e-19 *->dsgvlrVygedgtpgtyktilvskntTaeeViralLrKfgldaddpe + vlrV++ d++ ++ i++sk+tTa+eV+ ++ r f + + +p+ KIAA0313 615 PDQVLRVFKADQQ---SRYIMISKDTTAKEVVIQAIREFAV-TATPD 657 dyvLvEvslvlerggeerrvLpddEkPlqiqlqlkrdaqrsrFlLrrred y+L+Evs+ e +++r +Lpd+ l + ql ++r++L+++ + KIAA0313 658 QYSLCEVSVTPEGVIKQR-RLPDQLSKLADRIQL-----SGRYYLKNNME 701 <-* KIAA0313 - - PF00617.10.ls: domain 1 of 1, from 723 to 908: score 194.8, E = 1.8e-55 *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk L l+ +e+A+QL +++elf++I+p e + + + + KIAA0313 723 LQLSTVEVATQLSMRNFELFRNIEPTEYID--------DLFKLR--- 758 vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev + + n+ + Nq t +v+++Il+++ + kR+++ KIAA0313 759 -SKTSCANLKRFEEVINQETFWVASEILRET-----------NQLKRMKI 796 iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI i++fI +A hcRe +NFnS++aIis+L+ +p+ RL+ TWek+p ++ kl KIAA0313 797 IKHFIKIALHCRECKNFNSMFAIISGLNLAPVARLRTTWEKLPNKYEKL- 845 feeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLs f++L+ L+d++rN +yR++L+s + + P +P f+v+ + KIAA0313 846 FQDLQDLFDPSRNMAKYRNVLNSQNL-----------QPPIIPLFPVIKK 884 DLtfleeGnpdyleekKINtnlvNFsKrrk<-* DLtfl+eGn+++ +lvNF+K r+ KIAA0313 885 DLTFLHEGNDSKVD------GLVNFEKLRM 908 PF00617.10.fs: domain 1 of 1, from 723 to 908: score 193.0, E = 6.5e-55 *->LlldplelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkksfk L l+ +e+A+QL +++elf++I+p e + + + + KIAA0313 723 LQLSTVEVATQLSMRNFELFRNIEPTEYID--------DLFKLR--- 758 vkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkRaev + + n+ + Nq t +v+++Il+++ + kR+++ KIAA0313 759 -SKTSCANLKRFEEVINQETFWVASEILRET-----------NQLKRMKI 796 iqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqslklI i++fI +A hcRe +NFnS++aIis+L+ +p+ RL+ TWek+p ++ kl KIAA0313 797 IKHFIKIALHCRECKNFNSMFAIISGLNLAPVARLRTTWEKLPNKYEKL- 845 feeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGvYLs f++L+ L+d++rN +yR++L+s + + P +P f+v+ + KIAA0313 846 FQDLQDLFDPSRNMAKYRNVLNSQNL-----------QPPIIPLFPVIKK 884 DLtfleeGnpdyleekKINtnlvNFsKrrk<-* DLtfl+eGn+++ +lvNF+K r+ KIAA0313 885 DLTFLHEGNDSKVD------GLVNFEKLRM 908 //