hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23275631/chunk_1/iprscan-20080501-23275631.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0314 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00439.15.ls Bromodomain 120.7 3.8e-33 1 PF00439.15.fs Bromodomain 118.8 6.1e-33 1 PF02791.7.fs DDT domain 106.3 6.6e-30 1 PF01429.10.ls Methyl-CpG binding domain 109.7 8e-30 1 PF01429.10.fs Methyl-CpG binding domain 108.1 8.8e-30 1 PF02791.7.ls DDT domain 108.2 2.2e-29 1 PF00628.19.fs PHD-finger 59.0 1.5e-18 1 PF00628.19.ls PHD-finger 60.9 3.7e-15 1 PF02178.9.ls AT hook motif 47.0 6e-11 4 PF02178.9.fs AT hook motif 35.0 1.4e-09 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01429.10.ls 1/1 540 614 .. 1 129 [] 109.7 8e-30 PF01429.10.fs 1/1 540 614 .. 1 129 [] 108.1 8.8e-30 PF02178.9.ls 1/4 643 655 .. 1 13 [] 12.1 0.17 PF02178.9.ls 2/4 664 676 .. 1 13 [] 13.9 0.085 PF02791.7.fs 1/1 843 904 .. 1 62 [] 106.3 6.6e-30 PF02791.7.ls 1/1 843 904 .. 1 62 [] 108.2 2.2e-29 PF02178.9.ls 3/4 1180 1192 .. 1 13 [] 10.0 0.39 PF02178.9.ls 4/4 1398 1410 .. 1 13 [] 10.9 0.27 PF00628.19.fs 1/1 1672 1720 .. 1 51 [] 59.0 1.5e-18 PF00628.19.ls 1/1 1672 1720 .. 1 51 [] 60.9 3.7e-15 PF00439.15.fs 1/1 1795 1879 .. 1 92 [] 118.8 6.1e-33 PF00439.15.ls 1/1 1795 1879 .. 1 92 [] 120.7 3.8e-33 Alignments of top-scoring domains: PF01429.10.ls: domain 1 of 1, from 540 to 614: score 109.7, E = 8e-30 *->krtkredrlpLppGWrRetrqRksGssaNNNASNNNSATASNNnngk ++t++e rlpL++GWrRe+r++k Gs++ ++ KIAA0314 540 IATPEEVRLPLQHGWRREVRIKK-GSHR-----------------WQ 568 fDVyYysPtGkklrsksevarYLgkngdgkksvdaeirnelHtekrrkrs ++ +Yy P+Gk++++++ev++YL++n KIAA0314 569 GETWYYGPCGKRMKQFPEVIKYLSRNV----------------------- 595 rarrngksnkKvsvtslkledFdFttrkevgr<-* v+s+++e+F+F++r+ vg+ KIAA0314 596 -------------VHSVRREHFSFSPRMPVGD 614 PF01429.10.fs: domain 1 of 1, from 540 to 614: score 108.1, E = 8.8e-30 *->krtkredrlpLppGWrRetrqRksGssaNNNASNNNSATASNNnngk ++t++e rlpL++GWrRe+r++k Gs++ ++ KIAA0314 540 IATPEEVRLPLQHGWRREVRIKK-GSHR-----------------WQ 568 fDVyYysPtGkklrsksevarYLgkngdgkksvdaeirnelHtekrrkrs ++ +Yy P+Gk++++++ev++YL++n KIAA0314 569 GETWYYGPCGKRMKQFPEVIKYLSRNV----------------------- 595 rarrngksnkKvsvtslkledFdFttrkevgr<-* v+s+++e+F+F++r+ vg+ KIAA0314 596 -------------VHSVRREHFSFSPRMPVGD 614 PF02178.9.ls: domain 1 of 4, from 643 to 655: score 12.1, E = 0.17 *->kRkRGRPrKaata<-* + kRGRPr + +a KIAA0314 643 TGKRGRPRNTEKA 655 PF02178.9.ls: domain 2 of 4, from 664 to 676: score 13.9, E = 0.085 *->kRkRGRPrKaata<-* kR+RGRP+K + + KIAA0314 664 KRGRGRPPKVKIT 676 PF02791.7.fs: domain 1 of 1, from 843 to 904: score 106.3, E = 6.6e-30 *->esfgdlLmiyeFLnsFGevLdLsPftlddfiaaLleelleqsdllGE ++f+d+L+i+eFL+sFG+vL+++P+++++++++L+e+ll+q+d+lGE KIAA0314 843 GAFSDCLTIVEFLHSFGKVLGFDPAKDVPSLGVLQEGLLCQGDSLGE 889 vhvlLlRlllakeqd<-* v++lL+Rll+a+++d KIAA0314 890 VQDLLVRLLKAALHD 904 PF02791.7.ls: domain 1 of 1, from 843 to 904: score 108.2, E = 2.2e-29 *->esfgdlLmiyeFLnsFGevLdLsPftlddfiaaLleelleqsdllGE ++f+d+L+i+eFL+sFG+vL+++P+++++++++L+e+ll+q+d+lGE KIAA0314 843 GAFSDCLTIVEFLHSFGKVLGFDPAKDVPSLGVLQEGLLCQGDSLGE 889 vhvlLlRlllakeqd<-* v++lL+Rll+a+++d KIAA0314 890 VQDLLVRLLKAALHD 904 PF02178.9.ls: domain 3 of 4, from 1180 to 1192: score 10.0, E = 0.39 *->kRkRGRPrKaata<-* R RGRPrK+++ KIAA0314 1180 ARARGRPRKTKPG 1192 PF02178.9.ls: domain 4 of 4, from 1398 to 1410: score 10.9, E = 0.27 *->kRkRGRPrKaata<-* +++RGRP+ + + KIAA0314 1398 PKRRGRPPSKFFK 1410 PF00628.19.fs: domain 1 of 1, from 1672 to 1720: score 59.0, E = 1.5e-18 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C vC+k d++++ll+CDgCdr +H++C+ p++e +pe++W+C KIAA0314 1672 TCLVCRK--GDNDEFLLLCDGCDRGCHIYCHRPKME--AVPEgdWFC 1714 peCkpk<-* C + KIAA0314 1715 TVCLAQ 1720 PF00628.19.ls: domain 1 of 1, from 1672 to 1720: score 60.9, E = 3.7e-15 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C vC+k d++++ll+CDgCdr +H++C+ p++e +pe++W+C KIAA0314 1672 TCLVCRK--GDNDEFLLLCDGCDRGCHIYCHRPKME--AVPEgdWFC 1714 peCkpk<-* C + KIAA0314 1715 TVCLAQ 1720 PF00439.15.fs: domain 1 of 1, from 1795 to 1879: score 118.8, E = 6.1e-33 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk +++++l ++e h+ a+pfl+pV+p + +Y+ iIk+PMD++ KIAA0314 1795 FCEIILMEMES---HD-AAWPFLEPVNPR--LVSGYRRIIKNPMDFS 1835 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* T++++l g Y +s eeF aD L+f+N++t+Ne+dsev k+++ KIAA0314 1836 TMRERLLRGGY-TSSEEFAADALLVFDNCQTFNEDDSEVGKAGHI 1879 PF00439.15.ls: domain 1 of 1, from 1795 to 1879: score 120.7, E = 3.8e-33 *->lnklllkvlealdehgpralpflfpVlpsklelPDYYeiIkkPMDLk +++++l ++e h+ a+pfl+pV+p + +Y+ iIk+PMD++ KIAA0314 1795 FCEIILMEMES---HD-AAWPFLEPVNPR--LVSGYRRIIKNPMDFS 1835 TIkkklkngkYissleeFvaDfnLmfsNAktYNepdsevykdAkk<-* T++++l g Y +s eeF aD L+f+N++t+Ne+dsev k+++ KIAA0314 1836 TMRERLLRGGY-TSSEEFAADALLVFDNCQTFNEDDSEVGKAGHI 1879 //