hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23275631/chunk_1/iprscan-20080501-23275631.nocrc
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Query sequence: KIAA0314
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00297                                                 151.8      7e-41   1
SM00391                                                 132.0    6.6e-35   1
SM00571                                                  89.8    3.2e-22   1
SM00249                                                  54.4    1.5e-11   1
SM00384                                                  47.9    1.3e-09   4

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00391     1/1     543   618 ..     1    87 []   132.0  6.6e-35
SM00384     1/4     643   655 ..     1    13 []    11.2      5.2
SM00384     2/4     664   676 ..     1    13 []    14.5      1.3
SM00571     1/1     842   907 ..     1    65 []    89.8  3.2e-22
SM00384     3/4    1180  1192 ..     1    13 []    11.6      4.4
SM00384     4/4    1398  1410 ..     1    13 []    10.5      6.9
SM00249     1/1    1672  1718 ..     1    39 []    54.4  1.5e-11
SM00297     1/1    1785  1893 ..     1   118 []   151.8    7e-41

Alignments of top-scoring domains:
SM00391: domain 1 of 1, from 543 to 618: score 132.0, E = 6.6e-35
                   *->edelrlPaLppGWrRetvqRksgKKssagkgDVyYisPcGkkLRsks
                      ++e+rlP L++GWrRe++++k+   s++++g+++Y++PcGk++++++
    KIAA0314   543    PEEVRLP-LQHGWRREVRIKKG---SHRWQGETWYYGPCGKRMKQFP 585  

                   ElarYLhkngdlslaledPLRPEYlFdFnarvpvgpkitp<-*
                   E+++YL++n+++s+++e       +F+F++r+pvg+++++   
    KIAA0314   586 EVIKYLSRNVVHSVRRE-------HFSFSPRMPVGDFFEE    618  

SM00384: domain 1 of 4, from 643 to 655: score 11.2, E = 5.2
                   *->kRkRGRPrKaksa<-*
                      + kRGRPr +++a   
    KIAA0314   643    TGKRGRPRNTEKA    655  

SM00384: domain 2 of 4, from 664 to 676: score 14.5, E = 1.3
                   *->kRkRGRPrKaksa<-*
                      kR+RGRP+K k +   
    KIAA0314   664    KRGRGRPPKVKIT    676  

SM00571: domain 1 of 1, from 842 to 907: score 89.8, E = 3.2e-22
                   *->neefgdlLmvyEFLrsFgkvLgLspfra.vtledfieALkcrrdqyg
                      + +f+d+L ++EFL+sFgkvLg++p+++ ++l +++e+L c++d++g
    KIAA0314   842    SGAFSDCLTIVEFLHSFGKVLGFDPAKDvPSLGVLQEGLLCQGDSLG 888  

                   llaevlvvLLrailkdege<-*
                   +++++lv+LL+a+l+d+g    
    KIAA0314   889 EVQDLLVRLLKAALHDPGF    907  

SM00384: domain 3 of 4, from 1180 to 1192: score 11.6, E = 4.4
                   *->kRkRGRPrKaksa<-*
                      +R RGRPrK+k+    
    KIAA0314  1180    ARARGRPRKTKPG    1192 

SM00384: domain 4 of 4, from 1398 to 1410: score 10.5, E = 6.9
                   *->kRkRGRPrKaksa<-*
                      +++RGRP+ +  +   
    KIAA0314  1398    PKRRGRPPSKFFK    1410 

SM00249: domain 1 of 1, from 1672 to 1718: score 54.4, E = 1.5e-11
                   *->yC.vCgk....g.llqCdkgCdrwyHv.Clgpple.epdg.wyCprC
                      +C vC+k+++++ ll+Cd gCdr  H+ C++p++e +p+g+w+C  C
    KIAA0314  1672    TClVCRKgdndEfLLLCD-GCDRGCHIyCHRPKMEaVPEGdWFCTVC 1717 

                   k<-*
                   +   
    KIAA0314  1718 L    1718 

SM00297: domain 1 of 1, from 1785 to 1893: score 151.8, E = 7e-41
                   *->spk.qkklqellkallekldshgvpssrGrplawpFlepvdkkeLgv
                      s+++     ++++ +l +++sh        + awpFlepv++++  v
    KIAA0314  1785    SMRnHHSDLTFCEIILMEMESH--------DAAWPFLEPVNPRL--V 1821 

                   PDYydiIkkPMDLktIkkklengkYssleeFvaDfnLmfsNAktYNepds
                    +Y  iIk+PMD++t++++l  g Y+s eeF+aD  L+f+N++t+Ne ds
    KIAA0314  1822 SGYRRIIKNPMDFSTMRERLLRGGYTSSEEFAADALLVFDNCQTFNEDDS 1871 

                   evykdAkkLeklfeeklkelpp<-*
                   ev k+++ ++++fe++++e+++   
    KIAA0314  1872 EVGKAGHIMRRFFESRWEEFYQ    1893 

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