hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23325933/chunk_1/iprscan-20080501-23325933.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0317 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00119 555.2 2.7e-162 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00119 1/1 484 826 .] 1 407 [] 555.2 2.7e-162 Alignments of top-scoring domains: SM00119: domain 1 of 1, from 484 to 826: score 555.2, E = 2.7e-162 *->nsspddLkkrskeaLeIefvvnehgvgEeglDgGGvtrEFffllske n+s +d++k+ +e++f ++Ee+lD+GG++rE+f l++k KIAA0317 484 NFSISDWSKN----FEVVF------QDEEALDWGGPRREWFELICKA 520 lfnptdygLFryspndnaeksktiYigrlrylLfpnPsagfaneehlaav lf+ t++ + r+s+n++ L +++++++ +++l+ KIAA0317 521 LFDTTNQLFTRFSDNNQ--------------ALVHPNPNRP-AHLRLK-- 553 yFrfiGrvlGkAlye.......nrllDlrFarpFyKkLLgkpkgtdvtlh +++f Gr++Gk+lye++ ++ ++l+ +rF+r+F+++++g++ ++++ KIAA0317 554 MYEFAGRLVGKCLYEsslggayKQLVRARFTRSFLAQIIGLR----MHYK 599 DleslDPelyksLvwLilvrrKleleeDlseeskslenditeveldmaLt ++e DPe+yks v++i l+nd++e +++ + KIAA0317 600 YFETDDPEFYKSKVCFI------------------LNNDMSE--MEL-VF 628 FsivlesdfgevkvvELkpGGsnipVTeeNkkEYVhlvieyrlnkgvekq +++++++ + kvvEL++GG+++pVT++Nk++Y++l+++yrl +v++ KIAA0317 629 AEEKYNKSGQLDKVVELMTGGAQTPVTNANKIFYLNLLAQYRLASQVKEE 678 leAFreGFseVipeelLrylFdeeELeLLicGleeeidvddLksnTeyrg +e+F++G++e++pe+lL+ +Fde+ELeLL+cG++ +i+v+d+k +++++g KIAA0317 679 VEHFLKGLNELVPENLLA-IFDENELELLMCGTG-DISVSDFKAHAVVVG 726 gYtensqtirfkkwFWevvesFtneerrkLLqFVTGssrlPASvgGFaaL g++++++++ ++wFW vv+s+t+ee ++LLqF+TGss+lP +gGFaaL KIAA0317 727 GSWHFREKV--MRWFWTVVSSLTQEELARLLQFTTGSSQLP--PGGFAAL 772 spsNGpqkFtIrkagsetlsdddrLPtAhTCfNrLkLPpYsSkeiLreKL +p +F+I a+ ++ LPtAhTCfN+L+LP Y+S+e +++L KIAA0317 773 CP-----SFQIIAAP-----THSTLPTAHTCFNQLCLPTYDSYEEVHRML 812 LlAInegRiggeGFgls<-* +lAI e g+eGFg++ KIAA0317 813 QLAISE---GCEGFGML 826 //