hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23375558/chunk_1/iprscan-20080501-23375558.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0320 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01608.8.fs I/LWEQ domain 347.3 2.3e-101 3 PF01608.8.ls I/LWEQ domain 346.6 3.8e-101 1 PF08913.1.fs Vinculin Binding Site 302.6 6.6e-88 2 PF08913.1.ls Vinculin Binding Site 297.7 2e-86 1 PF09141.1.fs Talin, middle domain 90.8 7.4e-28 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF09141.1.fs 1/1 1 46 [. 119 164 .] 90.8 7.4e-28 PF08913.1.ls 1/1 1241 1365 .. 1 125 [] 297.7 2e-86 PF08913.1.fs 1/2 1241 1365 .. 1 125 [] 295.8 7.6e-86 PF08913.1.fs 2/2 1403 1465 .. 1 63 [. 6.8 0.14 PF01608.8.ls 1/1 1733 1924 .. 1 202 [] 346.6 3.8e-101 PF01608.8.fs 3/3 1733 1924 .. 1 202 [] 344.7 1.4e-100 Alignments of top-scoring domains: PF09141.1.fs: domain 1 of 1, from 1 to 46: score 90.8, E = 7.4e-28 *->dLLeAarkLcgAfSdLLkaaePeSkePRqnllnAAgrVGeASghlL< dLL+Aar+L+gA+SdLLka++P+S+ePRq++l+AAg++G+ASg+lL KIAA0320 1 DLLRAARTLAGAVSDLLKAVQPTSGEPRQTVLTAAGSIGQASGDLL 46 -* KIAA0320 - - PF08913.1.ls: domain 1 of 1, from 1241 to 1365: score 297.7, E = 2e-86 *->tFVDYQTrMVkyaKaIAvtAqEMvtKsvtnPeeLgqLAvqlTedYgq tFVDYQT++Vky+KaIAvtAqEM+tKsvtnPeeLg+LA+q+T+dYg+ KIAA0320 1241 TFVDYQTTVVKYSKAIAVTAQEMMTKSVTNPEELGGLASQMTSDYGH 1287 LAqdsrlAaataeseeiGfrIktrVqdLGhscivlVqkAGalqisPnDsy LA ++++Aaatae+eeiGf+I+trVqdLGh+ci+lVqkAGalq++P+Dsy KIAA0320 1288 LAFQGQMAAATAEPEEIGFQIRTRVQDLGHGCIFLVQKAGALQVCPTDSY 1337 tkreLiecAReVsEKVsqVLAALqAGsR<-* tkreLiecAR+V+EKVs+VL+ALqAG++ KIAA0320 1338 TKRELIECARAVTEKVSLVLSALQAGNK 1365 PF08913.1.fs: domain 1 of 2, from 1241 to 1365: score 295.8, E = 7.6e-86 *->tFVDYQTrMVkyaKaIAvtAqEMvtKsvtnPeeLgqLAvqlTedYgq tFVDYQT++Vky+KaIAvtAqEM+tKsvtnPeeLg+LA+q+T+dYg+ KIAA0320 1241 TFVDYQTTVVKYSKAIAVTAQEMMTKSVTNPEELGGLASQMTSDYGH 1287 LAqdsrlAaataeseeiGfrIktrVqdLGhscivlVqkAGalqisPnDsy LA ++++Aaatae+eeiGf+I+trVqdLGh+ci+lVqkAGalq++P+Dsy KIAA0320 1288 LAFQGQMAAATAEPEEIGFQIRTRVQDLGHGCIFLVQKAGALQVCPTDSY 1337 tkreLiecAReVsEKVsqVLAALqAGsR<-* tkreLiecAR+V+EKVs+VL+ALqAG++ KIAA0320 1338 TKRELIECARAVTEKVSLVLSALQAGNK 1365 PF08913.1.fs: domain 2 of 2, from 1403 to 1465: score 6.8, E = 0.14 *->tFVDYQTrMVkyaKaIAvtAqEMvtKsvtnPeeLgqLAvqlTedYgq tF+D + k+aKa + +v ++ P++L+q+A + +q KIAA0320 1403 TFADHRENILKTAKALVEDTKLLVSGAASTPDKLAQAAQSSAATITQ 1449 LAqdsrlAaataesee<-* LA+ ++l aa + s++ KIAA0320 1450 LAEVVKLGAASLGSDD 1465 PF01608.8.ls: domain 1 of 1, from 1733 to 1924: score 346.6, E = 3.8e-101 *->VnesILsaakaImkAiaaLVkAAsaaQrEivaqGrgsaspaefYkkn ++e+IL+aak+I++A++aLVk+AsaaQrE+vaqG+++++pa++ + + KIAA0320 1733 FEEQILEAAKSIAAATSALVKSASAAQRELVAQGKVGSIPANAAD-D 1778 srWTEGLISAAKaVgaAttvLvEAAdkvVtsEDnGkgsfEeLIVaakeVA ++W++GLISAA++V+aAt L+EAA+++V+ G++s+E+LI++ak+VA KIAA0320 1779 GQWSQGLISAARMVAAATSSLCEAANASVQ----GHASEEKLISSAKQVA 1824 ASTAQLVaASrVKAGDDkdSkaAldrLqaAakaVneAtanLVaaaksgai ASTAQL++A++VKA D+dS+a ++rLqaA++aV++A++nLV+aa+++a KIAA0320 1825 ASTAQLLVACKVKA--DQDSEA-MRRLQAAGNAVKRASDNLVRAAQKAAF 1871 fdiedqqeedfsslslhglKaqEmEqQveiLkLEkeLeeARkkLaelRKq ++d + ++++++++g++aq++++Q+e+Lk+E+eLeeARkkLa++R+q KIAA0320 1872 GKADDDD--VVVKTKFVGGIAQIIAAQEEMLKKERELEEARKKLAQIRQQ 1919 hYela<-* +Y++ KIAA0320 1920 QYKFL 1924 PF01608.8.fs: domain 3 of 3, from 1733 to 1924: score 344.7, E = 1.4e-100 *->VnesILsaakaImkAiaaLVkAAsaaQrEivaqGrgsaspaefYkkn ++e+IL+aak+I++A++aLVk+AsaaQrE+vaqG+++++pa++ + + KIAA0320 1733 FEEQILEAAKSIAAATSALVKSASAAQRELVAQGKVGSIPANAAD-D 1778 srWTEGLISAAKaVgaAttvLvEAAdkvVtsEDnGkgsfEeLIVaakeVA ++W++GLISAA++V+aAt L+EAA+++V+ G++s+E+LI++ak+VA KIAA0320 1779 GQWSQGLISAARMVAAATSSLCEAANASVQ----GHASEEKLISSAKQVA 1824 ASTAQLVaASrVKAGDDkdSkaAldrLqaAakaVneAtanLVaaaksgai ASTAQL++A++VKA D+dS+a ++rLqaA++aV++A++nLV+aa+++a KIAA0320 1825 ASTAQLLVACKVKA--DQDSEA-MRRLQAAGNAVKRASDNLVRAAQKAAF 1871 fdiedqqeedfsslslhglKaqEmEqQveiLkLEkeLeeARkkLaelRKq ++d + ++++++++g++aq++++Q+e+Lk+E+eLeeARkkLa++R+q KIAA0320 1872 GKADDDD--VVVKTKFVGGIAQIIAAQEEMLKKERELEEARKKLAQIRQQ 1919 hYela<-* +Y++ KIAA0320 1920 QYKFL 1924 //