hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23464837/chunk_1/iprscan-20080501-23464837.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0325 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00382 88.9 6.1e-22 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00382 1/4 1913 2057 .. 1 92 [] 19.8 0.24 SM00382 2/4 2228 2379 .. 1 92 [] 2.0 15 SM00382 3/4 2599 2749 .. 1 92 [] 36.4 3.8e-06 SM00382 4/4 2941 3107 .. 1 92 [] 30.6 0.00021 Alignments of top-scoring domains: SM00382: domain 1 of 4, from 1913 to 2057: score 19.8, E = 0.24 *->pgevvllvGppGsGKTTlaralarllgpgviyidge....ggqrirl g++ Gp G+GKT ++al ++lg+ v+++++++ ++ ++ r+ KIAA0325 1913 GGSPF---GPAGTGKTESVKALGHQLGRFVLVFNCDetfdFQAMGRI 1956 alalark.dvlllDEitslld............................. + l++ + +DE ++l + ++ +++ + ++ ++++++ + ++ + KIAA0325 1957 FVGLCQVgAWGCFDEFNRLEErmlsavsqqvqciqealrehsnpnydkts 2006 .................vtviattn......dldpallrrrfdrrivllr ++++++ + + + +++t+n++ ++ +p++l+ + r + + + KIAA0325 2007 apitcellnkqvkvspdMAIFITMNpgyagrSNLPDNLK-KLFRSLAMTK 2055 il<-* ++ KIAA0325 2056 PD 2057 SM00382: domain 2 of 4, from 2228 to 2379: score 2.0, E = 15 *->pgevvllvGppGsGKTTlaralarllgp......gviyidge..... ++ +++vGp+GsGK+ r l++ l++ ++ ++ +id+ +++ KIAA0325 2228 INHGLMMVGPSGSGKSMAWRVLLKALERlegvegVAHIIDPKaiskd 2274 .................ggqrirlalalark..............dvlll + + + + ++ ++ + + +r++++ +r ++++ +++ d ++ KIAA0325 2275 hlygtldpntrewtdglFTHVLRKIIDSVRGelqkrqwivfdgdvDPEWV 2324 DEitslld..................vtviattndldpallrrrfdrriv ++s ld+++++ + +++++++ +v++++ ++dl a l+ +++ +v KIAA0325 2325 ENLNSVLDdnklltlpngerlslppnVRIMFEVQDLKYATLATVSRCGMV 2374 llril<-* + KIAA0325 2375 WFSED 2379 SM00382: domain 3 of 4, from 2599 to 2749: score 36.4, E = 3.8e-06 *->pgevvllvGppGsGKTTlaralarllgp.gviyidge....ggqrir ++++ l+GppGsGKT ++ +r l+ v+ ++ ++ + ++ KIAA0325 2599 EHKPLVLCGPPGSGKTMTLFSALRALPDmEVVGLNFSsattPELLLK 2645 lalalark.................dvlllDEitslld............ +++++++++ + + ++ vl++DEi+ ++ + ++ + KIAA0325 2646 TFDHYCEYrrtpngvvlapvqlgkwLVLFCDEINLPDMdkygtqrvisfi 2695 ......................vtviattn...dldpallrrrfdrrivl ++ ++++ + +++ +++++++++++n+++d+++++l +rf r++ + KIAA0325 2696 rqmvehggfyrtsdqtwvklerIQFVGACNpptDPGRKPLSHRFLRHVPV 2745 lril<-* ++ KIAA0325 2746 VYVD 2749 SM00382: domain 4 of 4, from 2941 to 3107: score 30.6, E = 0.00021 *->pgevvllvGppGsGKTTlaralarllgpgviyidge....ggqrirl p +++ll+G +G+GKTTl r +a+ g +v+ i ++ g++ ++ KIAA0325 2941 PQGHLLLIGVSGAGKTTLSRFVAWMNGLSVYQIKVHrkytGEDFDED 2987 alalark.......dvlllDEitslld....................... +++ +r+++ ++ + ++DE + l + +++ + ++ +++ ++ ++++ KIAA0325 2988 LRTVLRRsgcknekIAFIMDESNVLDSgflermntllangevpglfegde 3037 ....................................vtviattn.....d + + +++ +++++ +++++++ + ++ ++++v++t+n+++++ KIAA0325 3038 yatlmtqckegaqkeglmldsheelykwftsqvirnLHVVFTMNpssegL 3087 ldpallrrrfdrrivllril<-* +d+a++ +++ r vl + KIAA0325 3088 KDRAATSPALFNRCVLNWFG 3107 //