hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-23572702/chunk_1/iprscan-20080501-23572702.nocrc
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Query sequence: KIAA0330
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
PF09047.1.fs MEF2 binding                                78.9    2.9e-22   1
PF09047.1.ls MEF2 binding                                80.8    3.8e-21   1
PF07719.7.fs Tetratricopeptide repeat                    65.3    2.8e-17   7
PF07719.7.ls Tetratricopeptide repeat                    65.0    2.3e-16   5
PF00515.18.fs Tetratricopeptide repeat                    53.1    4.3e-14   6
PF00515.18.ls Tetratricopeptide repeat                    48.6      2e-11   4

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PF00515.18.fs   2/6      94   127 ..     1    34 []    20.0  0.00011
PF00515.18.ls   1/4      94   127 ..     1    34 []    22.0   0.0019
PF00515.18.ls   2/4     128   161 ..     1    34 []    15.9    0.064
PF00515.18.fs   3/6     128   161 ..     1    34 []    13.9   0.0062
PF00515.18.fs   6/6    1130  1143 ..    21    34 .]     8.0     0.28
PF09047.1.ls   1/1    2160  2194 ..     1    35 []    80.8  3.8e-21
PF09047.1.fs   1/1    2160  2194 ..     1    35 []    78.9  2.9e-22

Alignments of top-scoring domains:
PF00515.18.fs: domain 2 of 6, from 94 to 127: score 20.0, E = 0.00011
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      + +y+nl+++  ++++++ A e+y +A+ ld ++   
    KIAA0330    94    YSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTD    127  

PF00515.18.ls: domain 1 of 4, from 94 to 127: score 22.0, E = 0.0019
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      + +y+nl+++  ++++++ A e+y +A+ ld ++   
    KIAA0330    94    YSTYKNLAQLAAQREDLETAMEFYLEAVMLDSTD    127  

PF00515.18.ls: domain 2 of 4, from 128 to 161: score 15.9, E = 0.064
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      ++ +y +G++ l+l +   A  a+e+ L+ +P++   
    KIAA0330   128    VNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDH    161  

PF00515.18.fs: domain 3 of 6, from 128 to 161: score 13.9, E = 0.0062
                   *->aeayynlGnaylklgkydeAieayekALeldPnn<-*
                      ++ +y +G++ l+l +   A  a+e+ L+ +P++   
    KIAA0330   128    VNLWYKIGHVALRLIRIPLARHAFEEGLRCNPDH    161  

PF00515.18.fs: domain 6 of 6, from 1130 to 1143: score 8.0, E = 0.28
                   *->ieayekALeldPnn<-*
                      + ++++ALe+d +n   
    KIAA0330  1130    LNCFRRALEIDSSN    1143 

PF09047.1.ls: domain 1 of 1, from 2160 to 2194: score 80.8, E = 3.8e-21
                   *->tLLsPKGsisEEtKqKLKsviLsaqsAAtvkKesL<-*
                      tLLsPKGsisEEtKqKLKs+iLsaqsAA+v+KesL   
    KIAA0330  2160    TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL    2194 

PF09047.1.fs: domain 1 of 1, from 2160 to 2194: score 78.9, E = 2.9e-22
                   *->tLLsPKGsisEEtKqKLKsviLsaqsAAtvkKesL<-*
                      tLLsPKGsisEEtKqKLKs+iLsaqsAA+v+KesL   
    KIAA0330  2160    TLLSPKGSISEETKQKLKSAILSAQSAANVRKESL    2194 

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