hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-23592198/chunk_1/iprscan-20080501-23592198.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0331 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01403.10.ls Sema domain 845.2 3e-251 1 PF01403.10.fs Sema domain 843.2 1.2e-250 1 PF00047.15.fs Immunoglobulin domain 31.7 6e-08 1 PF00047.15.ls Immunoglobulin domain 33.6 6.3e-07 1 PF07686.7.fs Immunoglobulin V-set domain 18.9 7e-05 1 PF07686.7.ls Immunoglobulin V-set domain 19.9 0.00049 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01403.10.ls 1/1 97 539 .. 1 490 [] 845.2 3e-251 PF01403.10.fs 1/1 97 539 .. 1 490 [] 843.2 1.2e-250 PF07686.7.ls 1/1 620 712 .. 1 141 [] 19.9 0.00049 PF07686.7.fs 1/1 633 712 .. 28 141 .] 18.9 7e-05 PF00047.15.fs 1/1 634 695 .. 1 65 [] 31.7 6e-08 PF00047.15.ls 1/1 634 695 .. 1 65 [] 33.6 6.3e-07 Alignments of top-scoring domains: PF01403.10.ls: domain 1 of 1, from 97 to 539: score 845.2, E = 3e-251 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek ++t+llde+++rL+VG+r+ vy+L+le++s+ +++i+Wps+ + k KIAA0331 97 LHTMLLDEYQERLFVGGRDLVYSLSLERISDG-YKEIHWPST--ALK 140 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl +eeC+mkGk+ eC+N++rVL++yn+thL++CGT+aF PvC +i++ KIAA0331 141 MEECIMKGKD----AGECANYVRVLHHYNRTHLLTCGTGAFDPVCAFIRV 186 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL g + e d+LF+l+++++e+G+grCP+dP+++++s l+ g +eL KIAA0331 187 GYHLE-------DPLFHLESPRSERGRGRCPFDPSSSFISTLI-G--SEL 226 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy ++G ++D +++rd+aI+Rs+g+ +++rTe++d+++l+eP+FV+sy KIAA0331 227 FAGLYSD------YWSRDAAIFRSMGRLAHIRTEHDDERLLKEPKFVGSY 270 pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl +ip+++++dD+kVYFFF+E+a e++ n+ +aiy+RV+R+C nDvGG+r l KIAA0331 271 MIPDNEDRDDNKVYFFFTEKALEAE-NNAHAIYTRVGRLCVNDVGGQRIL 319 elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs + nkW+TFLKARL+CSvpG++gi+ +yF+eL++vfllpt+++ KIAA0331 320 V-NKWSTFLKARLVCSVPGMNGID-TYFDELEDVFLLPTRDH-------- 359 erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg ++pvi+G+F+t+sn+++g +A+C+++ms Ir++F nGp++h+ Eg KIAA0331 360 -KNPVIFGLFNTTSNIFRG----HAICVYHMSSIRAAF-NGPYAHK--EG 401 pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm p ++w y+g kvPyPRPG+C+++++g++y +tkd+PDd++ f++shpLm KIAA0331 402 PEYHWSVYEG-KVPYPRPGSCASKVNGGRYGTTKDYPDDAIRFARSHPLM 450 devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt +++++P h++P++v+t+++y+l qIaVd rV+a+dGq Y+VlF+GTd+G+ KIAA0331 451 YQAIKPAHKKPILVKTDGKYNLKQIAVD-RVEAEDGQ-YDVLFIGTDNGI 498 vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-* vl kv+++++++++s+eev+leelq+fkdp +P+ ++eissk+ KIAA0331 499 VL-KVITIYNQEMeSMEEVILEELQIFKDP--VPIISMEISSKR 539 PF01403.10.fs: domain 1 of 1, from 97 to 539: score 843.2, E = 1.2e-250 *->frtllldedrgrLyVGArNhvyvLnledlserlqqkigWpsspgeek ++t+llde+++rL+VG+r+ vy+L+le++s+ +++i+Wps+ + k KIAA0331 97 LHTMLLDEYQERLFVGGRDLVYSLSLERISDG-YKEIHWPST--ALK 140 ceeCkmkGkspgcVeteCqNfirVLqpyndthLyvCGTnaFqPvCtlinl +eeC+mkGk+ eC+N++rVL++yn+thL++CGT+aF PvC +i++ KIAA0331 141 MEECIMKGKD----AGECANYVRVLHHYNRTHLLTCGTGAFDPVCAFIRV 186 gdrseAviiaetdcLFsldvekeesGkgrCPydPlhnstsvlvqgrtgeL g + e d+LF+l+++++e+G+grCP+dP+++++s l+ g +eL KIAA0331 187 GYHLE-------DPLFHLESPRSERGRGRCPFDPSSSFISTLI-G--SEL 226 YsGtvaDssvaasFsGrdpaIrRslgshdplrTeqhdskwlnePnFVdsy ++G ++D +++rd+aI+Rs+g+ +++rTe++d+++l+eP+FV+sy KIAA0331 227 FAGLYSD------YWSRDAAIFRSMGRLAHIRTEHDDERLLKEPKFVGSY 270 pipyvhsfdDdkVYFFFrEtaveyspncgkaiysRVaRvCknDvGGrryl +ip+++++dD+kVYFFF+E+a e++ n+ +aiy+RV+R+C nDvGG+r l KIAA0331 271 MIPDNEDRDDNKVYFFFTEKALEAE-NNAHAIYTRVGRLCVNDVGGQRIL 319 elnkWTTFLKARLnCSvpGeegipkfyFNeLQavfllptganlAreLgIs + nkW+TFLKARL+CSvpG++gi+ +yF+eL++vfllpt+++ KIAA0331 320 V-NKWSTFLKARLVCSVPGMNGID-TYFDELEDVFLLPTRDH-------- 359 erdpviYGVFttssnsiagpgdnSAVCaFsmsdIrqvFenGpfkhqssEg ++pvi+G+F+t+sn+++g +A+C+++ms Ir++F nGp++h+ Eg KIAA0331 360 -KNPVIFGLFNTTSNIFRG----HAICVYHMSSIRAAF-NGPYAHK--EG 401 pnskwlpyrglkvPyPRPGqCpndssgpnytStkdlPDdtlnfikshpLm p ++w y+g kvPyPRPG+C+++++g++y +tkd+PDd++ f++shpLm KIAA0331 402 PEYHWSVYEG-KVPYPRPGSCASKVNGGRYGTTKDYPDDAIRFARSHPLM 450 devvpPlhnrPlfvgtsvnyrlTqIaVdkrVragdGqlYtVlFlGTddGt +++++P h++P++v+t+++y+l qIaVd rV+a+dGq Y+VlF+GTd+G+ KIAA0331 451 YQAIKPAHKKPILVKTDGKYNLKQIAVD-RVEAEDGQ-YDVLFIGTDNGI 498 vlKkvvvlsrsss.syeevvleelqvfkdpriePvqnleisskq<-* vl kv+++++++++s+eev+leelq+fkdp +P+ ++eissk+ KIAA0331 499 VL-KVITIYNQEMeSMEEVILEELQIFKDP--VPIISMEISSKR 539 PF07686.7.ls: domain 1 of 1, from 620 to 712: score 19.9, E = 0.00049 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +++ t+ ++ + + e s +L Ct++ KIAA0331 620 ALDKTE--EH------------LAYGIENNSTLLECTPR-------- 644 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls s + + W+ q+ + ++ +e++ + + + KIAA0331 645 SLQA-KVIWFV-QKG-------------------RETRKEEVKTDDRVVK 673 gnpskgdfsLtIsnlqlsDsGtYyCavsnsnelvfgggtrLtVl<-* ++ + L l+ sD GtY+C+ ++++ ++L V+ KIAA0331 674 MDLG-----LLFLRLHKSDAGTYFCQTVEHSFVHTVRKITLEVV 712 PF07686.7.fs: domain 1 of 1, from 633 to 712: score 18.9, E = 7e-05 *->eGgsvtLpCtysGtfddsssssgtfsiyWyrqqppgkgpeliiisyy e s +L Ct++ s + + W+ q+ KIAA0331 633 ENNSTLLECTPR--------SLQA-KVIWFV-QKG------------ 657 syystsegngtvgerfkgrvtlsgnpskgdfsLtIsnlqlsDsGtYyCav + ++ +e++ + + + ++ + L l+ sD GtY+C+ KIAA0331 658 -------RETRKEEVKTDDRVVKMDLG-----LLFLRLHKSDAGTYFCQT 695 snsnelvfgggtrLtVl<-* ++++ ++L V+ KIAA0331 696 VEHSFVHTVRKITLEVV 712 PF00047.15.fs: domain 1 of 1, from 634 to 695: score 31.7, E = 6e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++s L C+ ++ +++v W++++++ t+ ++v+++ + ++ + + KIAA0331 634 NNSTLLECTP---RSLQAKVIWFVQKGrETrKEEVKTDDRVVKMDLG 677 tsLtitnvtpeDggtYtCvv<-* L ++++ ++D+gtY+C+ KIAA0331 678 --LLFLRLHKSDAGTYFCQT 695 PF00047.15.ls: domain 1 of 1, from 634 to 695: score 33.6, E = 6.3e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++s L C+ ++ +++v W++++++ t+ ++v+++ + ++ + + KIAA0331 634 NNSTLLECTP---RSLQAKVIWFVQKGrETrKEEVKTDDRVVKMDLG 677 tsLtitnvtpeDggtYtCvv<-* L ++++ ++D+gtY+C+ KIAA0331 678 --LLFLRLHKSDAGTYFCQT 695 //