hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00042498/chunk_1/iprscan-20080502-00042498.nocrc
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Query sequence: KIAA0334
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08447.1.fs PAS fold                                        77.4      1e-20   2
PF08447.1.ls PAS fold                                        77.3    4.4e-20   1
PF00010.16.fs Helix-loop-helix DNA-binding domain             40.8    3.3e-10   1
PF00989.14.fs PAS fold                                        35.0    4.3e-10   1
PF00010.16.ls Helix-loop-helix DNA-binding domain             42.7    1.2e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00010.16.ls   1/1      37    87 ..     1    53 []    42.7  1.2e-09
PF00010.16.fs   1/1      37    87 ..     1    53 []    40.8  3.3e-10
PF00989.14.fs   1/1     111   178 ..     1    72 [.    35.0  4.3e-10
PF08447.1.ls   1/1     288   381 ..     1   100 []    77.3  4.4e-20
PF08447.1.fs   2/2     288   381 ..     1   100 []    75.3  3.9e-20

Alignments of top-scoring domains:
PF00010.16.ls: domain 1 of 1, from 37 to 87: score 42.7, E = 1.2e-09
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      +R++ n  E++RRd+ N  + eL ++lP  +  +K++K ++L++ ++
    KIAA0334    37    KRVSRNKSEKKRRDQFNVLIKELGSMLPG-N-ARKMDKSTVLQKSID 81   

                   YIksLq<-*
                   ++++ +   
    KIAA0334    82 FLRKHK    87   

PF00010.16.fs: domain 1 of 1, from 37 to 87: score 40.8, E = 3.3e-10
                   *->rRrahnarERrRRdriNdafeeLrellPtlapskKlsKaeiLrlAve
                      +R++ n  E++RRd+ N  + eL ++lP  +  +K++K ++L++ ++
    KIAA0334    37    KRVSRNKSEKKRRDQFNVLIKELGSMLPG-N-ARKMDKSTVLQKSID 81   

                   YIksLq<-*
                   ++++ +   
    KIAA0334    82 FLRKHK    87   

PF00989.14.fs: domain 1 of 1, from 111 to 178: score 35.0, E = 4.3e-10
                   *->edlrailesnlpdgifvvDvedGrilyvNaaaeellGlsreeviGks
                      e+ + +le+ l+ + +++ + dG i yv+++ ++ll   +++++ +s
    KIAA0334   111    EFTQLMLEA-LDGFFLAI-MTDGSIIYVSESVTSLLEHLPSDLVDQS 155  

                   lldlipeeddaeclvaelllqaleq<-*
                   ++ +ipe +++e  v+++l ++l++   
    KIAA0334   156 IFNFIPEGEHSE--VYKILSTHLLE    178  

PF08447.1.ls: domain 1 of 1, from 288 to 381: score 77.3, E = 4.4e-20
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      +++ ++r   i GY p e+lg+s     +d+ H dD+e + ++++  
    KIAA0334   288    FLFLDHRAPPIIGYLPFEVLGTS----GYDYYHVDDLENLAKCHEH- 329  

                   lklkkgepysgeyRirrkdGeyrWveargrvirrDenGkpvrviGvavDI
                    + + g+  s++yR+++k  +++W++++++++++ +n++p +++++++++
    KIAA0334   330 -LMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVV 378  

                   Ter<-*
                   +     
    KIAA0334   379 SYA    381  

PF08447.1.fs: domain 2 of 2, from 288 to 381: score 75.3, E = 3.9e-20
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      +++ ++r   i GY p e+lg+s     +d+ H dD+e + ++++  
    KIAA0334   288    FLFLDHRAPPIIGYLPFEVLGTS----GYDYYHVDDLENLAKCHEH- 329  

                   lklkkgepysgeyRirrkdGeyrWveargrvirrDenGkpvrviGvavDI
                    + + g+  s++yR+++k  +++W++++++++++ +n++p +++++++++
    KIAA0334   330 -LMQYGKGKSCYYRFLTKGQQWIWLQTHYYITYHQWNSRPEFIVCTHTVV 378  

                   Ter<-*
                   +     
    KIAA0334   379 SYA    381  

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