hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00042498/chunk_1/iprscan-20080502-00042498.nocrc
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Query sequence: KIAA0334
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00091                                                  66.4    3.6e-15   2
SM00353                                                  54.4    1.4e-11   1
SM00086                                                  38.3    1.1e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00353    1/1      42    92 ..     1    61 []    54.4  1.4e-11
SM00091    1/2     111   177 ..     1    68 []    37.0  2.6e-06
SM00091    2/2     266   332 ..     1    68 []    29.4  0.00048
SM00086    1/1     338   381 ..     1    43 []    38.3  1.1e-06

Alignments of top-scoring domains:
SM00353: domain 1 of 1, from 42 to 92: score 54.4, E = 1.4e-11
                   *->narERrlrRRekiNeqafdeLrslvPtlpkgggnskKlsKasiLrlA
                      n +E+  +RR++ N   ++eL s++P      gn +K++K ++L++ 
    KIAA0334    42    NKSEK--KRRDQFNV-LIKELGSMLP------GNARKMDKSTVLQKS 79   

                   ieYIrksLqeqlqe<-*
                   i+++ ++ +e  ++   
    KIAA0334    80 IDFL-RKHKEITAQ    92   

SM00091: domain 1 of 2, from 111 to 177: score 37.0, E = 2.6e-06
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                      e+ + +le+l+ +++++  dG i+y++++++ ll   p +l+++s++
    KIAA0334   111    EFTQLMLEALDGFFLAIMTDGSIIYVSESVTSLLEHLPSDLVDQSIF 157  

                   elihpedrlleevqe.lqrlla<-*
                   ++i+++++   ev   l ++l    
    KIAA0334   158 NFIPEGEH--SEVYKiLSTHLL    177  

SM00091: domain 2 of 2, from 266 to 332: score 29.4, E = 0.00048
                   *->erlraileslpdgiivldldGrilyaNpaaeellGyspeeliGksll
                       ++ ++ e   ++  +++l++++l+ +++a  + Gy p e++G+s +
    KIAA0334   266    KEMCTVEEPNEEFTSRHSLEWKFLFLDHRAPPIIGYLPFEVLGTSGY 312  

                   elihpedrlleevqe.lqrlla<-*
                   +++h +d+  e +   +++l++   
    KIAA0334   313 DYYHVDDL--ENLAKcHEHLMQ    332  

SM00086: domain 1 of 1, from 338 to 381: score 38.3, E = 1.1e-06
                   *->tveyrlrrkdGsliwvlvsaspird.edgevegilgvvrDITer<-*
                      ++ yr+++k++++iw++++ ++ +++++ ++e+i++++++++ +   
    KIAA0334   338    SCYYRFLTKGQQWIWLQTHYYITYHqWNSRPEFIVCTHTVVSYA    381  

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