hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00092176/chunk_1/iprscan-20080502-00092176.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0337 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00621.11.fs RhoGEF domain 152.0 9.4e-45 1 PF00621.11.ls RhoGEF domain 153.8 4.1e-43 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00621.11.fs 1/1 616 799 .. 1 207 [] 152.0 9.4e-45 PF00621.11.ls 1/1 616 799 .. 1 207 [] 153.8 4.1e-43 Alignments of top-scoring domains: PF00621.11.fs: domain 1 of 1, from 616 to 799: score 152.0, E = 9.4e-45 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v+ ll TE Yv++L++l ++ym+pL++++ s l +p ++ iF KIAA0337 616 VAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSV--LCDPSLVDEIF 660 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel. i++++e h +FL +++++ +q +G+l+ ++ KIAA0337 661 DQIPELLEHHEQFLE-QVRHCMQTW-----------HAQQKVGALLVQSf 698 .kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA +k+ ++Y +Y++n+ +A++ ++ ++++p+F +fl++ + + n++ KIAA0337 699 sKDVLVNIYSAYIDNFLNAKDAVRV--AKEARPAFLKFLEQSMRE-NKE- 744 kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal k L++L++kPvqRi+rY+LL+k+LLkhtpe d++++++L +a+ KIAA0337 745 -----KQALSDLMIKPVQRIPRYELLVKDLLKHTPE--DHPDHPLLLEAQ 787 dalqdlaksiNe<-* ++++ +a++iN KIAA0337 788 RNIKQVAERINK 799 PF00621.11.ls: domain 1 of 1, from 616 to 799: score 153.8, E = 4.1e-43 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v+ ll TE Yv++L++l ++ym+pL++++ s l +p ++ iF KIAA0337 616 VAMTLLDTEQSYVESLRTLMQGYMQPLKQPENSV--LCDPSLVDEIF 660 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlel. i++++e h +FL +++++ +q +G+l+ ++ KIAA0337 661 DQIPELLEHHEQFLE-QVRHCMQTW-----------HAQQKVGALLVQSf 698 .kaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA +k+ ++Y +Y++n+ +A++ ++ ++++p+F +fl++ + + n++ KIAA0337 699 sKDVLVNIYSAYIDNFLNAKDAVRV--AKEARPAFLKFLEQSMRE-NKE- 744 kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal k L++L++kPvqRi+rY+LL+k+LLkhtpe d++++++L +a+ KIAA0337 745 -----KQALSDLMIKPVQRIPRYELLVKDLLKHTPE--DHPDHPLLLEAQ 787 dalqdlaksiNe<-* ++++ +a++iN KIAA0337 788 RNIKQVAERINK 799 //