hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00105851/chunk_1/iprscan-20080502-00105851.nocrc
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Query sequence: KIAA0338
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00295                                                 274.9    6.3e-78   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00295    1/1     146   341 ..     1   232 []   274.9  6.3e-78

Alignments of top-scoring domains:
SM00295: domain 1 of 1, from 146 to 341: score 274.9, E = 6.3e-78
                   *->spkprvlkVylldgttlefevdssttaeelletvcrklglspresey
                      + k   ++V+lld + +e+ev+++ ++++l++ vc++l+l  +e++y
    KIAA0338   146    KYKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNL--LEKDY 190  

                   FgLqfedkdedshWldpaktilkqdvkspksepltlyFRvkFyppdwhgp
                   FgL f+d d+++ Wldp+k+i+kq+++     p+++ F vkFyppd    
    KIAA0338   191 FGLTFCDADSQKNWLDPSKEIKKQIRS----SPWNFAFTVKFYPPD---- 232  

                   peqlkeDptrynllylQvrddilsGrlpcpseeeallLAaLalqaefGdy
                   p ql+eD+try +l+lQ+r di++Grlpc+ + +++lL+++a+qae+Gdy
    KIAA0338   233 PAQLTEDITRY-YLCLQLRADIITGRLPCS-FVTHALLGSYAVQAELGDY 280  

                   dpeeeekkkslkhvakelslkrflPkqlldsikasflqiqltlkewrerI
                   d e        +hv +++s+ rf P+q               + e++erI
    KIAA0338   281 DAE--------EHVGNYVSELRFAPNQ---------------TRELEERI 307  

                   velhkehaglspeeaklkYLelarrLpptYGvelF<-*
                   +elhk ++g++p ea++++Le+a++L  +YGv+l+   
    KIAA0338   308 MELHKTYRGMTPGEAEIHFLENAKKLS-MYGVDLH    341  

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