hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00155592/chunk_1/iprscan-20080502-00155592.nocrc
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Query sequence: KIAA0341
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF06818.5.fs Fez1                                           309.5    4.2e-97   1
PF06818.5.ls Fez1                                           311.2    1.7e-90   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF06818.5.fs   1/1     368   529 ..     1   220 []   309.5  4.2e-97
PF06818.5.ls   1/1     368   529 ..     1   220 []   311.2  1.7e-90

Alignments of top-scoring domains:
PF06818.5.fs: domain 1 of 1, from 368 to 529: score 309.5, E = 4.2e-97
                   *->TkWEVCQKsGEISLLKQQLKESQAEVnQKaSEilaLraqLrdtRAqL
                      ++WEVCQK++EISLLKQQL+E+QAE++QK++Ei++L++qLr++RAq+
    KIAA0341   368    ARWEVCQKTAEISLLKQQLREAQAELAQKLAEIFSLKTQLRGSRAQA 414  

                   rekEerllgLrdAlrtKeLELEvCEgELqRklqEaallPvDLvEPrEkvg
                   ++++++l +Lr+A+r+               lqE+a++       +E++g
    KIAA0341   415 QAQDAELVRLREAVRS---------------LQEQAPR-------EEAPG 442  

                   slEadeaklReqadaaaaadvRmRqDAqGrPelllesdeAkvdqeGeGgt
                   s+E+d++k+R++                     l+   eA       Gg+
    KIAA0341   443 SCETDDCKSRGL---------------------LG---EA-------GGS 461  

                   eAqlreLRrelERLRAELreERqrrerQalsFeqERlvWqeEKEkVirYQ
                   eA     R  +E+LRAEL++ER+r+++Qal+FeqER++WqeEKE+V+rYQ
    KIAA0341   462 EA-----RDSAEQLRAELLQERLRGQEQALRFEQERRTWQEEKERVLRYQ 506  

                   kQLQlSYveMYqRNQaLEkeLqq<-*
                   +++Q+ Y++MY+RNQaLE+eL+    
    KIAA0341   507 REIQGGYMDMYRRNQALEQELRA    529  

PF06818.5.ls: domain 1 of 1, from 368 to 529: score 311.2, E = 1.7e-90
                   *->TkWEVCQKsGEISLLKQQLKESQAEVnQKaSEilaLraqLrdtRAqL
                      ++WEVCQK++EISLLKQQL+E+QAE++QK++Ei++L++qLr++RAq+
    KIAA0341   368    ARWEVCQKTAEISLLKQQLREAQAELAQKLAEIFSLKTQLRGSRAQA 414  

                   rekEerllgLrdAlrtKeLELEvCEgELqRklqEaallPvDLvEPrEkvg
                   ++++++l +Lr+A+r+               lqE+a++       +E++g
    KIAA0341   415 QAQDAELVRLREAVRS---------------LQEQAPR-------EEAPG 442  

                   slEadeaklReqadaaaaadvRmRqDAqGrPelllesdeAkvdqeGeGgt
                   s+E+d++k+R++                     l+   eA       Gg+
    KIAA0341   443 SCETDDCKSRGL---------------------LG---EA-------GGS 461  

                   eAqlreLRrelERLRAELreERqrrerQalsFeqERlvWqeEKEkVirYQ
                   eA     R  +E+LRAEL++ER+r+++Qal+FeqER++WqeEKE+V+rYQ
    KIAA0341   462 EA-----RDSAEQLRAELLQERLRGQEQALRFEQERRTWQEEKERVLRYQ 506  

                   kQLQlSYveMYqRNQaLEkeLqq<-*
                   +++Q+ Y++MY+RNQaLE+eL+    
    KIAA0341   507 REIQGGYMDMYRRNQALEQELRA    529  

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