hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00193444/chunk_1/iprscan-20080502-00193444.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0343 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 236.9 1.6e-66 6 SM00408 234.5 8.8e-66 6 SM00060 169.6 3.2e-46 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/6 60 149 .. 1 58 [] 23.9 0.022 SM00408 1/6 66 137 .. 1 56 [] 26.7 0.0033 SM00409 2/6 159 246 .. 1 58 [] 39.2 5.7e-07 SM00408 2/6 165 232 .. 1 56 [] 11.3 0.36 SM00409 3/6 265 346 .. 1 58 [] 39.7 3.8e-07 SM00408 3/6 271 335 .. 1 56 [] 67.9 1.3e-15 SM00409 4/6 355 438 .. 1 58 [] 46.6 3.2e-09 SM00408 4/6 361 427 .. 1 56 [] 51.1 1.4e-10 SM00409 5/6 449 531 .. 1 58 [] 36.1 4.8e-06 SM00408 5/6 455 520 .. 1 56 [] 49.6 4.1e-10 SM00409 6/6 540 622 .. 1 58 [] 51.4 1.2e-10 SM00408 6/6 546 611 .. 1 56 [] 27.9 0.0014 SM00060 1/4 635 718 .. 1 69 [] 53.0 3.9e-11 SM00060 2/4 735 818 .. 1 69 [] 24.2 0.019 SM00060 3/4 834 925 .. 1 69 [] 44.4 1.5e-08 SM00060 4/4 940 1025 .. 1 69 [] 48.0 1.3e-09 Alignments of top-scoring domains: SM00409: domain 1 of 6, from 60 to 149: score 23.9, E = 0.022 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+++ + e+++++C+a+++++++++W++++++ + ++++ + ++ KIAA0343 60 PKdYIIDPRENIVIQCeAKgkpppSFSWTrngthfdidkdplvtmkp 106 ....LtI.nvtpeDse..sgGtYtCaat..sgsasseqgttLtVl<-* ++++L+I+ ++ +e+ + G+Y+C+a++ g a s +++ ++ + KIAA0343 107 gtgtLIInIMSEGKAEtyE-GVYQCTARneRGAAVS-NNIVVRPS 149 SM00408: domain 1 of 6, from 66 to 137: score 26.7, E = 0.0033 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt + ++++++C+a g+p p+++W+++g++ + ++++ + +++ +tL KIAA0343 66 DPRENIVIQCEAKGKPPPSFSWTRnGTHFDidkdplvtmkpGTGTLI 112 iknvsleDs....GlYtCvArNsvg<-* i +s++ +++ +G+Y+C+ArN+ g KIAA0343 113 INIMSEGKAetyeGVYQCTARNERG 137 SM00409: domain 2 of 6, from 159 to 246: score 39.2, E = 5.7e-07 *->pp.vtvkeGesvtLtC.as......titWy................. +++t + G+s++L+C+ + + +++ i+W++++ ++ +++ + +++ KIAA0343 159 LEpITLQSGQSLVLPCrPPiglpppIIFWMdnsfqrlpqservsqgl 205 ...LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* +++L ++nv peD+ + +Y C a+ +++ +++ q++ ++V KIAA0343 206 ngdLYFsNVLPEDT--REDYICYARfnhtQTIQQK-QPISVKVI 246 SM00408: domain 2 of 6, from 165 to 232: score 11.3, E = 0.36 *->leGqsVtLtCp.asgdpvpnItWlk..gkplp........sgstLti ++Gqs++L+C++ g p p I W ++ ++lp++++ +++ ++ L + KIAA0343 165 QSGQSLVLPCRpPIGLPPPIIFWMDnsFQRLPqservsqgLNGDLYF 211 knvsleDsGl.YtCvArNsvg<-* +nv +eD ++Y C+Ar ++ KIAA0343 212 SNVLPEDTREdYICYARFNHT 232 SM00409: domain 3 of 6, from 265 to 346: score 39.7, E = 3.8e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++ + +G ++L+C a++ +++ i+W + ++ +++++ ++ + KIAA0343 265 ASnKEELRGNVLSLECiAEglptpIIYWAkedgmlpknrtvyknfek 311 .LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +L+I +v+++Ds G+Y+C a++ g ++ ++ ++V+ KIAA0343 312 tLQIiHVSEADS---GNYQCIAKnaLGAIHH--TISVRVK 346 SM00408: domain 3 of 6, from 271 to 335: score 67.9, E = 1.3e-15 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn l G+ ++L+C+a+g p+p I W k++ +lp++++ ++ ++tL+i + KIAA0343 271 LRGNVLSLECIAEGLPTPIIYWAKeDGMLPknrtvyknFEKTLQIIH 317 vsleDsGlYtCvArNsvg<-* vs++DsG+Y+C+A N+ g KIAA0343 318 VSEADSGNYQCIAKNALG 335 SM00409: domain 4 of 6, from 355 to 438: score 46.6, E = 3.2e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p++++ ++Ge+ tL C+a+++++++i+W++++ + +++++++ + KIAA0343 355 PQnLVLSPGEDGTLICrANgnpkpRISWLtngvpieiapddpsrkid 401 ...LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* +++++++nv++ s ++Y+C a++ +g + ++ + Vl KIAA0343 402 gdtIIFsNVQERSS---AVYQCNASneYGYLLA--NAFVNVL 438 SM00408: domain 4 of 6, from 361 to 427: score 51.1, E = 1.4e-10 *->leGqsVtLtCpasgdpvpnItWlk.gkplp..........sgstLti +G++ tL C+a+g+p p I+Wl +g p++ +++++++ +g t + KIAA0343 361 SPGEDGTLICRANGNPKPRISWLTnGVPIEiapddpsrkiDGDTIIF 407 knvsleDsGlYtCvArNsvg<-* +nv++ s +Y+C A+N+ g KIAA0343 408 SNVQERSSAVYQCNASNEYG 427 SM00409: domain 5 of 6, from 449 to 531: score 36.1, E = 4.8e-06 *->pp.vtvkeGesvtLtC.as.....titWy.................. + v + ++ L C + +++ +ti W+++ +++ + + + + KIAA0343 449 NTlYQVIANRPALLDCaFFgsplpTIEWFkgakgsalhediyvlhen 495 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L+I+ ++++ + GtYtC+a+++ g+a+ +++L+++ KIAA0343 496 gtLEIpVAQKDST---GTYTCVARnkLGMAKN--EVHLEIK 531 SM00408: domain 5 of 6, from 455 to 520: score 49.6, E = 4.1e-10 *->leGqsVtLtCpasgdpvpnItWlk...gkplp.......sgstLtik + +++ L C g+p p+I W+k+ +g+ l ++ + ++tL+i KIAA0343 455 IANRPALLDCAFFGSPLPTIEWFKgakGSALHediyvlhENGTLEIP 501 nvsleDsGlYtCvArNsvg<-* ++++ G+YtCvArN+ g KIAA0343 502 VAQKDSTGTYTCVARNKLG 520 SM00409: domain 6 of 6, from 540 to 622: score 51.4, E = 1.2e-10 *->pp.vtvkeGesvtLtC.as.......titWy................ p+ +v++G+ v+++C+++++++ + t+ W+++++ +++ + + ++ KIAA0343 540 PEyAVVQRGSMVSFECkVKhdhtlslTVLWLkdnrelpsderftvdk 586 ..LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++L++ +v+ +Ds GtYtC+a+++ s+s+ ++ L+V KIAA0343 587 dhLVVaDVSDDDS---GTYTCVANttLDSVSA--SAVLSVV 622 SM00408: domain 6 of 6, from 546 to 611: score 27.9, E = 0.0014 *->leGqsVtLtCpasgdpv..pnItWlk.gkplp.......sgstLtik + G V+++C++ d++ + ++ Wlk++ +lp++++ + ++ +L + KIAA0343 546 QRGSMVSFECKVKHDHTlsLTVLWLKdNRELPsderftvDKDHLVVA 592 nvsleDsGlYtCvArNsvg<-* +vs +DsG+YtCvA KIAA0343 593 DVSDDDSGTYTCVANTTLD 611 SM00060: domain 1 of 4, from 635 to 718: score 53.0, E = 3.9e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP..........ivgY P pP + l++td + sv+lsW+p ++++++ + i++Y KIAA0343 635 PNPPFD---LELTDQLDK------SVQLSWTPGddnnspitkfIIEY 672 r....................ytltgLkPgaepwteYefrVrAvngndaG ++ +++ + +++++++++ +L+P+ +Y+frV Avn+ G KIAA0343 673 EdamhkpglwhhqtevsgtqtTAQLNLSPY----VNYSFRVMAVNS--IG 716 eg<-* + KIAA0343 717 KS 718 SM00060: domain 2 of 4, from 735 to 818: score 24.2, E = 0.019 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv P+ ++ ++ ++++W+p ++ ++++++ + v KIAA0343 735 DKNPTA---VEGLGSEPD------NLVITWKPLngfesngpglqyKV 772 gYr..................ytltgLkPgaepwteYefrVrAvngndaG ++r+++++++++++++ ++++y+++g Y ++V+A n+ G KIAA0343 773 SWRqkdgddewtsvvvanvskYIVSGTPTF----VPYLIKVQALND--MG 816 eg<-* KIAA0343 817 FA 818 SM00060: domain 3 of 4, from 834 to 925: score 44.4, E = 1.5e-08 *->PgpPsnptelrvtdvtststsdltsvtlsWepP............iv +P+n +rv v+st ++++W+p + ++ ++ ++++ KIAA0343 834 MVAPGN---VRVNVVNST------LAEVHWDPVplksirghlqgyRI 871 gYr..........................ytltgLkPgaepwteYefrVr +Y++++++++++++ +++ + +++++ l+gL+P + Y+ Vr KIAA0343 872 YYWktqssskrnrrhiekkiltfqgskthGMLPGLEPF----SHYTLNVR 917 AvngndaGeg<-* +vng +Geg KIAA0343 918 VVNG--KGEG 925 SM00060: domain 4 of 4, from 940 to 1025: score 48.0, E = 1.3e-09 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... P++Ps l++++ t + s+tl+W+pP+++++ ++Y+ + KIAA0343 940 PSAPSS---LKIVNPTLD------SLTLEWDPPshpngiLTEYTlky 977 .......................ytltgLkPgaepwteYefrVrAvngnd ++ +++ + ++ ++ + + ++++ tl++L t+Y+f +A ++ KIAA0343 978 qpinsthelgplvdlkipanktrWTLKNLNFS----TRYKFYFYAQTS-- 1021 aGeg<-* aG+g KIAA0343 1022 AGSG 1025 //