hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00261876/chunk_1/iprscan-20080502-00261876.nocrc
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Query sequence: KIAA0347
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08447.1.fs PAS fold                                        44.3    1.4e-11   1
PF08447.1.ls PAS fold                                        43.0    9.2e-10   1
PF00989.14.fs PAS fold                                        23.5    1.3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08447.1.fs   1/1     369   456 ..     1    92 [.    44.3  1.4e-11
PF08447.1.ls   1/1     369   464 ..     1   100 []    43.0  9.2e-10
PF00989.14.fs   1/1     372   461 ..    28   123 .]    23.5  1.3e-06

Alignments of top-scoring domains:
PF08447.1.fs: domain 1 of 1, from 369 to 456: score 44.3, E = 1.4e-11
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      +  +++r   +lGY p++l++++     l  +HP Dr+++ + +++ 
    KIAA0347   369    FQDVDERAVPLLGYLPQDLIETP----VLVQLHPSDRPLMLAIHKK- 410  

                   lklk.kgepysg.eyRirrkdGeyrWveargrvirrDenGkpvrviG<-*
                     l+++g+p++ +  R+r ++Gey+ ++++ + + + ++ k+ ++iG   
    KIAA0347   411 -ILQsGGQPFDYsPIRFRARNGEYITLDTSWSSFINPWSRKISFIIG    456  

PF08447.1.ls: domain 1 of 1, from 369 to 464: score 43.0, E = 9.2e-10
                   *->iiywsprfeeilGYspeellgkssyedwldlvHPdDrervrealqea
                      +  +++r   +lGY p++l++++     l  +HP Dr+++ + +++ 
    KIAA0347   369    FQDVDERAVPLLGYLPQDLIETP----VLVQLHPSDRPLMLAIHKKI 411  

                   lklkkgepysg.eyRirrkdGeyrWveargrvirrDenGkpvrviGvavD
                   l  +++ p++ +  R+r ++Gey+ ++++ + + + ++ k+ ++iG +++
    KIAA0347   412 LQSGGQ-PFDYsPIRFRARNGEYITLDTSWSSFINPWSRKISFIIGRHKV 460  

                   ITer<-*
                          
    KIAA0347   461 RVGP    464  

PF00989.14.fs: domain 1 of 1, from 372 to 461: score 23.5, E = 1.3e-06
                   *->vNaaaeellGlsreeviGkslldlipeeddaeclvaelllqaleqge
                      v + a  llG+ ++++i  ++l ++++ d+    ++++ ++ l++g+
    KIAA0347   372    VDERAVPLLGYLPQDLIETPVLVQLHPSDRPL--MLAIHKKILQSGG 416  

                   e.rgvevsfrvsgqrflvrdgrpihvevraspvrdaggeil.gflgvlrD
                   ++++      +s+ rf  r+g++i ++  +s +++++++ ++ ++g+++ 
    KIAA0347   417 QpFD------YSPIRFRARNGEYITLDTSWSSFINPWSRKIsFIIGRHKV 460  

                   i<-*
                   +   
    KIAA0347   461 R    461  

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