# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01561.fasta.huge -Q ../query/KIAA0349.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0349, 1275 aa
 vs ./tmplib.23147 library

1986230 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 4.9567+/-0.00495; mu= 18.3815+/- 0.338
 mean_var=96.5493+/-23.261, 0's: 0 Z-trim: 1  B-trim: 4 in 1/39
 Lambda= 0.130527

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA2024  ( 437 res)   ff08438                     ( 437)  376 81.6 3.1e-16


>>KIAA2024  ( 437 res)   ff08438                          (437 aa)
 initn: 271 init1: 154 opt: 376  Z-score: 383.3  bits: 81.6 E(): 3.1e-16
Smith-Waterman score: 413;  25.243% identity (54.126% similar) in 412 aa overlap (885-1252:32-422)

          860       870       880       890       900       910    
KIAA03 SCAYTIQSIERILSDEDKPLFGPLPCRLDDCLRSLTRFAAAHWTVASVSVVQGHFCKL--
                                     :: .: .  : :  . :..   . . ::  
KIAA20 FTYRTNLELELIHRGGNLCSGGASTAGKRSCLNQLFHVLALHMRLYSIDSEYNPWRKLTQ
              10        20        30        40        50        60 

            920           930       940        950       960       
KIAA03 FASLVPNDSHEE----LPCILDIDMFHLLVGLVLAFPA-LQCQDFSGISLGTGDLHIFHL
       .  . :. ..::    .: ::  :.  ::.  .: .:  :. . :. :      ....  
KIAA20 LEEMNPQLGYEEQQPEVP-ILYHDVTSLLLIQILMMPQPLRKDHFTCI------VKVLFT
              70         80        90       100             110    

       970       980       990                    1000       1010  
KIAA03 VTMAHIIQILLTSCTEENGMDQENP------PCEEESA--------VLALYK-TLHQYTG
       . ... .  : ..:.::.    ..        :. :..        .  :.:  :..  :
KIAA20 LLYTQALAALSVKCSEEDRSAWKHAGALKKSTCDAEKSYEVLLSFVISELFKGKLYHEEG
          120       130       140       150       160       170    

             1020         1030      1040      1050      1060       
KIAA03 SALKEI--PSGWH---LWRSVRAGIMPFLKCSALFFHYLNGVPSPPDIQVPGTSHFEHLC
       .    .  : .:    . . ..   .:::. ..:. :.: :   :   .     .:  : 
KIAA20 TQECAMVNPIAWSPESMEKCLQDFCLPFLRITSLLQHHLFGEDLP---SCQEEEEFSVLA
          180       190       200       210          220       230 

      1070      1080                 1090      1100        1110    
KIAA03 SYLSLPNNLICLFQENSEIMNS-----------LIESWCRNSEVKRYLE--GERDAIRYP
       : :.:   :  ..: .  ....           .: .::   :.: . :  .:.      
KIAA20 SCLGL---LPTFYQTEHPFISASCLDWPVPAFDIITQWCF--EIKSFTERHAEQGKALLI
                240       250       260         270       280      

             1120      1130      1140      1150      1160      1170
KIAA03 RESN----KLINLPEDYSSLINQASNFSCPKSGGDKSRAPTLCLVCGSLLCSQSYCCQTE
       .::.    .:..:::.:.....     .:        . :..:::::...: .. ::. .
KIAA20 QESKWKLPHLLQLPENYNTIFQYYHRKTCSVCT-KVPKDPAVCLVCGTFVCLKGLCCKQQ
        290       300       310        320       330       340     

             1180      1190      1200      1210      1220      1230
KIAA03 LEGEDVGACTAHTYSCGSGVGIFLRVRECQVLFLAGKTKGCFYSPPYLDDYGETDQGLRR
          :    :. :. .::.:.:::: .    .... :. . :...  ::: .:: :. :::
KIAA20 SYCE----CVLHSQNCGAGTGIFLLINASVIIIIRGH-RFCLWGSVYLDAHGEEDRDLRR
             350       360       370        380       390       400

             1240      1250      1260      1270     
KIAA03 GNPLHLCKERFKKIQKLWHQHSVTEEIGHAQEANQTLVGIDWQHL
       :.::..::::.: ... : .:.                       
KIAA20 GKPLYICKERYKVLEQQWISHTFDHINKRWGPHYNGL        
              410       420       430               




1275 residues in 1 query   sequences
1986230 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:17:47 2008 done: Thu Dec 18 15:17:48 2008
 Total Scan time:  0.760 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]