hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00374353/chunk_1/iprscan-20080502-00374353.nocrc
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Query sequence: KIAA0354
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00651.21.ls BTB/POZ domain                                 140.0    5.8e-39   1
PF00651.21.fs BTB/POZ domain                                 138.3      2e-38   1
PF00096.16.ls Zinc finger, C2H2 type                          40.2    6.7e-09   2
PF00096.16.fs Zinc finger, C2H2 type                          36.2    8.9e-08   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00651.21.fs   1/1      67   176 ..     1   135 []   138.3    2e-38
PF00651.21.ls   1/1      67   176 ..     1   135 []   140.0  5.8e-39
PF00096.16.fs   2/2     694   717 ..     1    24 []    25.8  3.6e-05
PF00096.16.ls   2/2     694   717 ..     1    24 []    27.7  3.7e-05

Alignments of top-scoring domains:
PF00651.21.fs: domain 1 of 1, from 67 to 176: score 138.3, E = 2e-38
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln +r++g+lcD+++vvg        +++fkAH+ vLaacS+ F+al
    KIAA0354    67    LNYQRLHGQLCDCVIVVG--------NRHFKAHRSVLAACSTHFRAL 105  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+        ++ ++++ +++ e v++e+f al++ +Yt++l++      
    KIAA0354   106 FSVAEG----DQTMNMI-QLDSEVVTAEAFAALIDMMYTSTLMLG----- 145  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         e+nv+d+L aA ++l++ s+v+aC ++l + +   
    KIAA0354   146 ------ESNVMDVLLAA-SHLHLNSVVKACKHYLTTRT    176  

PF00651.21.ls: domain 1 of 1, from 67 to 176: score 140.0, E = 5.8e-39
                   *->lnelrkqgelcDVtLvvgdgsgrydvgkkfkAHKavLaacSpYFkal
                      ln +r++g+lcD+++vvg        +++fkAH+ vLaacS+ F+al
    KIAA0354    67    LNYQRLHGQLCDCVIVVG--------NRHFKAHRSVLAACSTHFRAL 105  

                   FtgqfkesiteeessvsseieledvspedfealLefiYtgelsitqdqks
                   F+        ++ ++++ +++ e v++e+f al++ +Yt++l++      
    KIAA0354   106 FSVAEG----DQTMNMI-QLDSEVVTAEAFAALIDMMYTSTLMLG----- 145  

                   PssckseenvedlLaaAadllqipslvdaCeefliksl<-*
                         e+nv+d+L aA ++l++ s+v+aC ++l + +   
    KIAA0354   146 ------ESNVMDVLLAA-SHLHLNSVVKACKHYLTTRT    176  

PF00096.16.fs: domain 2 of 2, from 694 to 717: score 25.8, E = 3.6e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C  +Cgk+Fs++s+L +H +t++   
    KIAA0354   694    YACL-KCGKRFSQSSHLYKHSKTtC    717  

PF00096.16.ls: domain 2 of 2, from 694 to 717: score 27.7, E = 3.7e-05
                   *->ykCpfdCgksFsrksnLkrHlrt.H<-*
                      y C  +Cgk+Fs++s+L +H +t++   
    KIAA0354   694    YACL-KCGKRFSQSSHLYKHSKTtC    717  

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