hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00405794/chunk_1/iprscan-20080502-00405794.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0356
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02759.9.ls RUN domain                                     207.6    2.6e-59   1
PF02759.9.fs RUN domain                                     205.8    7.1e-59   1
PF00169.19.fs PH domain                                       32.2    2.4e-09   2
PF00169.19.ls PH domain                                       34.2    4.3e-07   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02759.9.fs   1/1      51   185 ..     1   174 []   205.8  7.1e-59
PF02759.9.ls   1/1      51   185 ..     1   174 []   207.6  2.6e-59
PF00169.19.fs   1/2     537   627 ..     1    92 []    24.1  7.2e-07
PF00169.19.ls   1/2     537   627 ..     1    92 []    26.0  0.00012

Alignments of top-scoring domains:
PF02759.9.fs: domain 1 of 1, from 51 to 185: score 205.8, E = 7.1e-59
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      t+C aleA+++HGL+++                    +++a++++ +
    KIAA0356    51    TMCSALEAVFIHGLHAK--------------------HIRAEAGGKR 77   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   ++s   ++q++l+      +p+f++l +a ++khi+s++e+L++     +
    KIAA0356    78 KKS---AHQKPLP------QPVFWPLLKAVTHKHIISELEHLTF-----V 113  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   +t+vgr+R  AW+RlaLn+ ++++ylklLl+++++l++yY+p+AlLrd+ 
    KIAA0356   114 NTDVGRCR--AWLRLALNDGLMECYLKLLLQEQARLHEYYQPTALLRDA- 160  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    eeg e+lls+LqgL++l+F+L++k++   
    KIAA0356   161 -EEG-EFLLSFLQGLTSLSFELSYKSA    185  

PF02759.9.ls: domain 1 of 1, from 51 to 185: score 207.6, E = 2.6e-59
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      t+C aleA+++HGL+++                    +++a++++ +
    KIAA0356    51    TMCSALEAVFIHGLHAK--------------------HIRAEAGGKR 77   

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   ++s   ++q++l+      +p+f++l +a ++khi+s++e+L++     +
    KIAA0356    78 KKS---AHQKPLP------QPVFWPLLKAVTHKHIISELEHLTF-----V 113  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   +t+vgr+R  AW+RlaLn+ ++++ylklLl+++++l++yY+p+AlLrd+ 
    KIAA0356   114 NTDVGRCR--AWLRLALNDGLMECYLKLLLQEQARLHEYYQPTALLRDA- 160  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    eeg e+lls+LqgL++l+F+L++k++   
    KIAA0356   161 -EEG-EFLLSFLQGLTSLSFELSYKSA    185  

PF00169.19.fs: domain 1 of 2, from 537 to 627: score 24.1, E = 7.2e-07
                   *->vikeGwLlkkggkkswkkRyfvLfd..dvLlyykdkkkkpkgsipLs
                      ++k G + ++g+ + wk+ ++ L++ + +L++  ++ ++++   +L 
    KIAA0356   537    LMKLGTVERRGAMGIWKELFCELSPleFRLYLSNEE-HTCVENCSLL 582  

                   gi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<
                    +++v ++ +   +  Fe++++++ +l l+a+s++e+++W++  ++a+  
    KIAA0356   583 RCeSVGPAHS---DGRFELVFsGK-KLALRASSQDEAEDWLDRVREALQ  627  

                   -*
                     
    KIAA0356     -    -    

PF00169.19.ls: domain 1 of 2, from 537 to 627: score 26.0, E = 0.00012
                   *->vikeGwLlkkggkkswkkRyfvLfd..dvLlyykdkkkkpkgsipLs
                      ++k G + ++g+ + wk+ ++ L++ + +L++  ++ ++++   +L 
    KIAA0356   537    LMKLGTVERRGAMGIWKELFCELSPleFRLYLSNEE-HTCVENCSLL 582  

                   gi.qvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsair<
                    +++v ++ +   +  Fe++++++ +l l+a+s++e+++W++  ++a+  
    KIAA0356   583 RCeSVGPAHS---DGRFELVFsGK-KLALRASSQDEAEDWLDRVREALQ  627  

                   -*
                     
    KIAA0356     -    -    

//