hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00405794/chunk_1/iprscan-20080502-00405794.nocrc
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Query sequence: KIAA0356
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00593                                                  93.8      2e-23   1
SM00233                                                  76.4    3.5e-18   2
SM00109                                                  29.7    0.00039   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00593     1/1     120   183 ..     1    68 []    93.8    2e-23
SM00233     1/2     537   629 ..     1    82 []    45.8  5.6e-09
SM00233     2/2     686   781 ..     1    82 []    30.6  0.00022
SM00109     1/1     989  1042 ..     1    61 []    29.7  0.00039

Alignments of top-scoring domains:
SM00593: domain 1 of 1, from 120 to 183: score 93.8, E = 2e-23
                   *->frAwirlaLneklLsswLnlLlsdrkllskyYepwAflrsaeadpee
                      +rAw+rlaLn+ l++++L+lLl+++ +l++yY+p+A+lr+     ee
    KIAA0356   120    CRAWLRLALNDGLMECYLKLLLQEQARLHEYYQPTALLRD----AEE 162  

                   geqlltlLqgLsaldfnlpvd<-*
                   ge+ll+ LqgL +l+f+l+++   
    KIAA0356   163 GEFLLSFLQGLTSLSFELSYK    183  

SM00233: domain 1 of 2, from 537 to 629: score 45.8, E = 5.6e-09
                   *->vikeGwLlkks.k.swkkryfvLfn..gvLlyyksk.kpkgsipLsg
                      + k G++ +++  + wk+ ++ L + + +L++  +++++ +  +L  
    KIAA0356   537    LMKLGTVERRGaMgIWKELFCELSPleFRLYLSNEEhTCVENCSLLR 583  

                   c.svre.p...cFeivt.drtlllqAeseeereeWvealqsaiaka<-*
                   c+sv + ++++ Fe+v++++ l l+A+s++e+e+W++  ++a++k    
    KIAA0356   584 CeSVGPaHsdgRFELVFsGKKLALRASSQDEAEDWLDRVREALQKV    629  

SM00233: domain 2 of 2, from 686 to 781: score 30.6, E = 0.00022
                   *->vikeGwLlkksk.swkkryfvLfngvLlyyksk.kpkgsipLsgc.s
                       ike  L+ +  ++w+++ f L    L +++ ++  k+  +  g+++
    KIAA0356   686    AIKESLLYLYMDrTWMPYIFSLSLEALKCFRIRnNEKMLSDSHGVeT 732  

                   vre.p.........cFeivt.drtlllqAeseeereeWvealqsaiaka<
                   +r+  ++ + ++++ F+i+t + +l lqA ++ee+  W +  ++++a++ 
    KIAA0356   733 IRDiLpdtslggpsFFKIITaKAVLKLQAGNAEEAALWRDLVRKVLASY  781  

                   -*
                     
    KIAA0356     -    -    

SM00109: domain 1 of 1, from 989 to 1042: score 29.7, E = 0.00039
                   *->Hkfvfrtf..kptfCdvCrksiwgsfkqaaksqglrCseCkvkcHkk
                      H +++  +++++  C++C+++ + ++ ++  ++ +rC eCk ++H++
    KIAA0356   989    HVYHCDLCtqRGFICQICQHHDIIFPFEF--DTTVRCAECKTVFHQS 1033 

                   CaekvpaqshksglsC<-*
                   C++ v +        C   
    KIAA0356  1034 CQAVVKK-------GC    1042 

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