hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00464696/chunk_1/iprscan-20080502-00464696.nocrc
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Query sequence: KIAA0359
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00225.13.ls Kinesin motor domain                           619.9     2e-183   1
PF00225.13.fs Kinesin motor domain                           618.3   6.2e-183   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00225.13.fs   1/1      28   354 ..     1   424 []   618.3 6.2e-183
PF00225.13.ls   1/1      28   354 ..     1   424 []   619.9   2e-183

Alignments of top-scoring domains:
PF00225.13.fs: domain 1 of 1, from 28 to 354: score 618.3, E = 6.2e-183
                   *->RvRPlnerEksrgssdvvnv.....sedvessvitn.gkektFtFDk
                      R+RP+n++Ek+++  +vv+v+ + +  +v++ ++t+++++ktFtFD+
    KIAA0359    28    RCRPMNGKEKAASYDKVVDVdvklgQVSVKNPKGTAhEMPKTFTFDA 74   

                   VFdpeatQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGK
                   V+d +a          q ++y++t +plv+svl+G+N+tIFAYGQTG+GK
    KIAA0359    75 VYDWNAK---------QFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGK 115  

                   TYTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkp
                   TYTMeG +               ++e +G+iP +++++F +i++ +    
    KIAA0359   116 TYTMEGIRG--------------DPEKRGVIPNSFDHIFTHISRSQ---- 147  

                   vfKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEI
                                                        +++++v++SylEI
    KIAA0359   148 -------------------------------------NQQYLVRASYLEI 160  

                   YNEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkG
                   Y+E+irDLLs++             ++k  L+++e p++G     vyVk+
    KIAA0359   161 YQEEIRDLLSKD-------------QTKR-LELKERPDTG-----VYVKD 191  

                   LteveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrnt
                   L++++ +s+ e+ +++++Gn+nR+v++T+mNe+SSRSHaiF it+e ++ 
    KIAA0359   192 LSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEV 241  

                   dttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEa
                   +           +ge+++rv+kLnLVDLAGSER++kTg   A+g+RLkEa
    KIAA0359   242 GL----------DGENHIRVGKLNLVDLAGSERQAKTG---AQGERLKEA 278  

                   anINkSLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTl
                   ++IN+SLsaLGnVI+AL+d+ ks+HiPYRDSKLTrLLQDSLGG  N+KT+
    KIAA0359   279 TKINLSLSALGNVISALVDG-KSTHIPYRDSKLTRLLQDSLGG--NAKTV 325  

                   MIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   M+an+ P+s+    n+eETL TLr+A+RAKnIk   
    KIAA0359   326 MVANVGPASY----NVEETLTTLRYANRAKNIK    354  

PF00225.13.ls: domain 1 of 1, from 28 to 354: score 619.9, E = 2e-183
                   *->RvRPlnerEksrgssdvvnv.....sedvessvitn.gkektFtFDk
                      R+RP+n++Ek+++  +vv+v+ + +  +v++ ++t+++++ktFtFD+
    KIAA0359    28    RCRPMNGKEKAASYDKVVDVdvklgQVSVKNPKGTAhEMPKTFTFDA 74   

                   VFdpeatQelsepYAsqefvyestakplvesvleGyNvtIFAYGQTGSGK
                   V+d +a          q ++y++t +plv+svl+G+N+tIFAYGQTG+GK
    KIAA0359    75 VYDWNAK---------QFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGK 115  

                   TYTMeGstdsdksspnpsdsCttpeeepGiiPRaledlFerieerkerkp
                   TYTMeG +               ++e +G+iP +++++F +i++ +    
    KIAA0359   116 TYTMEGIRG--------------DPEKRGVIPNSFDHIFTHISRSQ---- 147  

                   vfKPklnekgwellncqetligvsfdtrglsSdlyvedlefsvkvSylEI
                                                        +++++v++SylEI
    KIAA0359   148 -------------------------------------NQQYLVRASYLEI 160  

                   YNEkirDLLspsppqrgspskdnekkkkkpLrireDpkrGgkmdgvyVkG
                   Y+E+irDLLs++             ++k  L+++e p++G     vyVk+
    KIAA0359   161 YQEEIRDLLSKD-------------QTKR-LELKERPDTG-----VYVKD 191  

                   LteveVtsaeevlelLelGnknRtvasTkmNeeSSRSHaiFtitveqrnt
                   L++++ +s+ e+ +++++Gn+nR+v++T+mNe+SSRSHaiF it+e ++ 
    KIAA0359   192 LSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEV 241  

                   dttgsvvtgkdnsgeesvrvskLnLVDLAGSERaskTgatgAggrRLkEa
                   +           +ge+++rv+kLnLVDLAGSER++kTg   A+g+RLkEa
    KIAA0359   242 GL----------DGENHIRVGKLNLVDLAGSERQAKTG---AQGERLKEA 278  

                   anINkSLsaLGnVInALadnqkssHiPYRDSKLTrLLQDSLGGGDNsKTl
                   ++IN+SLsaLGnVI+AL+d+ ks+HiPYRDSKLTrLLQDSLGG  N+KT+
    KIAA0359   279 TKINLSLSALGNVISALVDG-KSTHIPYRDSKLTRLLQDSLGG--NAKTV 325  

                   MIaniSPsssrNntnyeETLsTLrFAsRAKnIk<-*
                   M+an+ P+s+    n+eETL TLr+A+RAKnIk   
    KIAA0359   326 MVANVGPASY----NVEETLTTLRYANRAKNIK    354  

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