hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-00550236/chunk_1/iprscan-20080502-00550236.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0364 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00409 179.2 3.9e-49 11 SM00408 84.4 1.4e-20 9 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/11 144 224 .. 1 58 [] 7.2 31 SM00409 2/11 238 323 .. 1 58 [] 21.6 0.11 SM00408 1/9 244 307 .. 1 56 [] 1.3 4.1 SM00409 3/11 334 418 .. 1 58 [] 14.1 4.9 SM00409 4/11 429 516 .. 1 58 [] 30.7 0.0002 SM00408 2/9 435 500 .. 1 56 [] 32.6 5.3e-05 SM00409 5/11 527 600 .. 1 58 [] 13.8 5.4 SM00408 3/9 533 592 .. 1 56 [] 3.9 2.2 SM00409 6/11 789 874 .. 1 58 [] 12.4 7.7 SM00408 4/9 795 858 .. 1 56 [] 12.3 0.29 SM00409 7/11 885 970 .. 1 58 [] 25.0 0.01 SM00408 5/9 891 959 .. 1 56 [] 2.4 3.1 SM00409 8/11 981 1066 .. 1 58 [] 18.3 1.1 SM00408 6/9 987 1051 .. 1 56 [] 2.8 2.8 SM00409 9/11 1077 1162 .. 1 58 [] 9.7 16 SM00408 7/9 1083 1146 .. 1 56 [] 3.1 2.6 SM00409 10/11 1173 1258 .. 1 58 [] 26.3 0.0042 SM00408 8/9 1179 1242 .. 1 56 [] 15.0 0.15 SM00409 11/11 1269 1348 .. 1 58 [] 0.1 2.1e+02 SM00408 9/9 1275 1334 .. 1 56 [] 10.9 0.4 Alignments of top-scoring domains: SM00409: domain 1 of 11, from 144 to 224: score 7.2, E = 31 *->pp.vtvkeGesvtLtC.as..............titWy......... +++ + e++tL C+ ++ +++ ++++++tW ++++++ + KIAA0364 144 ESnYPQAPWENITLWCrSPsrisskflllkdktQMTWIrpshktfqv 190 .LtI.nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* ++ I+ +t++++ G Y+C ++ +++s ++ ++ l KIAA0364 191 sFLIgALTESNA---GLYRCCYWKETGWS-KPSKVLEL 224 SM00409: domain 2 of 11, from 238 to 323: score 21.6, E = 0.11 *->pp.vtvkeGesvtLtC.as....titWy................... + ++ + +G +v++ C+ + + + +++ + + + + ++++ KIAA0364 238 QAeTPALPGCNVNILChGWlqdlVFMLFkegyaepvdyqvptgtmai 284 LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-* + I+n+tpeD+ G+Y C+ + ++ s s ++ +L V KIAA0364 285 FSIdNLTPEDE---GVYICRTHiqmlptLWSEPS-NPLKLVVA 323 SM00408: domain 1 of 9, from 244 to 307: score 1.3, E = 4.1 *->leGqsVtLtCpasgdpvpnItWlk...gkplp......sgstLtikn l+G +V + C+ + ++ +k++ +p++ + ++++ +i n KIAA0364 244 LPGCNVNILCH-GWLQDLVFMLFKegyAEPVDyqvptgTMAIFSIDN 289 vsleDsGlYtCvArNsvg<-* ++eD+G+Y C+ + KIAA0364 290 LTPEDEGVYICRTHIQML 307 SM00409: domain 3 of 11, from 334 to 418: score 14.1, E = 4.9 *->pp.vtvkeGesvtLtC.as....titWy................... p+ +Ges++L+C+ + + t+ +++ + ++ ++++ ++ KIAA0364 334 HPgPIMAPGESLNLRCqGPiygmTFALMrvedleksfyhkktiknea 380 .LtI.nvtpeDsesgGtYtCaat....sgsasseqgttLtVl<-* ++ +++++ +D+ G Y C + + gs s + ++ V+ KIAA0364 381 nFFFqSLKIQDT---GHYLCFYYdasyRGSLLS-DVLKIWVT 418 SM00409: domain 4 of 11, from 429 to 516: score 30.7, E = 0.0002 *->pp.vtvkeGesvtLtC.as....titWy................... p+ +v+ G++v+L+C+ + ++ + +y+++ +++ + + ++ +++ KIAA0364 429 RPsAVVQMGQNVSLRCrGPvdgvGLALYkkgedkplqfldatsiddn 475 ..LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-* +++ ++nvt++D+ G+Y C + +++ + s ++++L V KIAA0364 476 tsFFLnNVTYSDT---GIYSCHYLltwktsIRMPSH-NTVELMVV 516 SM00408: domain 2 of 9, from 435 to 500: score 32.6, E = 5.3e-05 *->leGqsVtLtCpasgdpvpnItWlk...gkplp........sgstLti ++Gq+V+L+C+ ++ +k++++kpl+ + ++ +++ + + KIAA0364 435 QMGQNVSLRCR-GPVDGVGLALYKkgeDKPLQfldatsidDNTSFFL 480 knvsleDsGlYtCvArNsvg<-* nv+++D G+Y+C + KIAA0364 481 NNVTYSDTGIYSCHYLLTWK 500 SM00409: domain 5 of 11, from 527 to 600: score 13.8, E = 5.4 *->pp.vtvkeGesvtLtC.as......titWy.............LtI. p+++ k+G +tL+C++s++ ++ W + + ++ + +++++I+ KIAA0364 527 WPsTVFKLGKAITLQCrVShpvlefSLEWEeretfqkfsvngdFIIs 573 nvtpeDsesgGtYtCaatsgsasseqgttLtVl<-* nv + GtY C + + + ++++ + + KIAA0364 574 NVDGKGT---GTYSCSYR--VETH-PNIWSHRS 600 SM00408: domain 3 of 9, from 533 to 592: score 3.9, E = 2.2 *->leGqsVtLtCp.asgdpvpnItWlk...gkplpsgstLtiknvsleD + G ++tL+C+ + + W +++ ++ + ++ i+nv KIAA0364 533 KLGKAITLQCRvSHPVLEFSLEWEEretFQKFSVNGDFIISNVDGKG 579 sGlYtCvArNsvg<-* G+Y+C+ r + + KIAA0364 580 TGTYSCSYRVETH 592 SM00409: domain 6 of 11, from 789 to 874: score 12.4, E = 7.7 *->pp.vtvkeGesvtLtC.as....titWy................... + +G+ ++L+C+ + + + +y+ + + + ++ + ++ KIAA0364 789 ISaSPTIRGQELQLRCkGWlagmGFALYkegeqepvqqlgavgreaf 835 LtI.nvtpeDsesgGtYtCaat.......sgsasseqgttLtVl<-* +tI++ + D+ G+Y C+ ++ +++ ++ + s + +L ++ KIAA0364 836 FTIqRMEDKDE---GNYSCRTHtekrpfkWSEPSE--PLELVIK 874 SM00408: domain 4 of 9, from 795 to 858: score 12.3, E = 0.29 *->leGqsVtLtCpasgdpvpnItWlk...gkplp......sgstLtikn + Gq ++L+C+ + + +k+++ +p+++ + + + + ti++ KIAA0364 795 IRGQELQLRCK-GWLAGMGFALYKegeQEPVQqlgavgREAFFTIQR 840 vsleDsGlYtCvArNsvg<-* ++ D+G+Y+C+ ++ KIAA0364 841 MEDKDEGNYSCRTHTEKR 858 SM00409: domain 7 of 11, from 885 to 970: score 25.0, E = 0.01 *->pp.vtvkeGesvtLtC.as..titWy..................... + +v +G +vt++C+ ++ +++ ++++ +++++ +++ + KIAA0364 885 WAsPVVTPGARVTFNCsTPhqHMSFIlykdgseiassdrswaspgas 931 ...LtI.nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-* ++ I +v D G+Y C+ + + s s ++++L V+ KIAA0364 932 aahFLIiSVGIGDG---GNYSCRYYdfsIWSEPS-DPVELVVT 970 SM00408: domain 5 of 9, from 891 to 959: score 2.4, E = 3.1 *->leGqsVtLtCpasgdpvpnItWlk.gkplp...........sgstLt +G Vt++C + ++ +k+g+++++++++ +++ s + KIAA0364 891 TPGARVTFNCS-TPHQHMSFILYKdGSEIAssdrswaspgaSAAHFL 936 iknvsleDsGlYtCvA..rNsvg<-* i +v +D G+Y+C+ + + ++ KIAA0364 937 IISVGIGDGGNYSCRYydFSIWS 959 SM00409: domain 8 of 11, from 981 to 1066: score 18.3, E = 1.1 *->pp.vtvkeGesvtLtC.as....titWy................... +p+ +v +G sv L+C+ + + ++ +++ + + + + ++ ++++ + KIAA0364 981 QPgPVVFPGKSVILRCqGTfqgmRFALLqegahvplqfrsvsgnsad 1027 LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-* + ++ v +eDs G+Y C ++ ++ gs+ s + + V+ KIAA0364 1028 FLLhTVGAEDS---GNYSCIYYettmsnRGSYLS-MPLMIWVT 1066 SM00408: domain 6 of 9, from 987 to 1051: score 2.8, E = 2.8 *->leGqsVtLtCpasgdpvpnItWlk.gkplp........sgstLtikn +G sV+L+C + + + l +g ++p + ++ ++++ + KIAA0364 987 FPGKSVILRCQ-GTFQGMRFALLQeGAHVPlqfrsvsgNSADFLLHT 1032 vsleDsGlYtC.vArNsvg<-* v eDsG+Y+C + + ++ KIAA0364 1033 VGAEDSGNYSCiYYETTMS 1051 SM00409: domain 9 of 11, from 1077 to 1162: score 9.7, E = 16 *->pp.vtvkeGesvtLtC.as...............titWy........ p+ +v G++vtL C+ + ++ + ++ + +++++++++++++ KIAA0364 1077 EPsSVVPMGQNVTLWCrGPvhgvgyilhkegeatSMQLWgstsndga 1123 LtI.nvtpeDsesgGtYtCaat.......sgsasseqgttLtVl<-* + I+n++ G Y C +++ +++ + + s + +L V+ KIAA0364 1124 FPItNISGTSM---GRYSCCYHpdwtssiKIQPSN--TLELLVT 1162 SM00408: domain 7 of 9, from 1083 to 1146: score 3.1, E = 2.6 *->leGqsVtLtCpasgdpvpnItWlk...gkplp......sgstLtikn +Gq+VtL C+ ++ k+++ ++++ +++++++ i+n KIAA0364 1083 PMGQNVTLWCR-GPVHGVGYILHKegeATSMQlwgstsNDGAFPITN 1128 vsleDsGlYtCvArNsvg<-* +s G+Y+C + KIAA0364 1129 ISGTSMGRYSCCYHPDWT 1146 SM00409: domain 10 of 11, from 1173 to 1258: score 26.3, E = 0.0042 *->pp.vtvkeGesvtLtC.as....titWy................... +p+ v +Ge+ tL+C+ + +++t+ +++ + + + ++++++ + + KIAA0364 1173 QPgPMVAPGENMTLQCqGElpdsTFVLLkegaqepleqqrpsgyrad 1219 LtI.nvtpeDsesgGtYtCaat......sgsasseqgttLtVl<-* + ++ v+ eDs G+Y C+ ++++ + s +s ++ ++ V+ KIAA0364 1220 FWMpAVRGEDS---GIYSCVYYldstpfAASNHS-DSLEIWVT 1258 SM00408: domain 8 of 9, from 1179 to 1242: score 15.0, E = 0.15 *->leGqsVtLtCpasgdpvpnItWlk...gkplp......sgstLtikn +G++ tL+C p+ ++ lk++ +pl+++++++++ KIAA0364 1179 APGENMTLQCQ-GELPDSTFVLLKegaQEPLEqqrpsgYRADFWMPA 1224 vsleDsGlYtCvArNsvg<-* v+ eDsG+Y+Cv KIAA0364 1225 VRGEDSGIYSCVYYLDST 1242 SM00409: domain 11 of 11, from 1269 to 1348: score 0.1, E = 2.1e+02 *->pp.vtvkeGesvtLtC.as..titWy.................LtI. p++ k+G ++tL+C+ + + + +++ +++ + +++++I+ KIAA0364 1269 WPsTMFKLGKDITLQCrGPlpGVEFVlehdgeeapqqfsedgdFVIn 1315 nvtpeDsesgGtYtCaat...sgsasseqgttLtVl<-* nv+ G+Y C + + +++se++ L+ KIAA0364 1316 NVEGKGI---GNYSCSYRlqaYPDIWSEPSDPLELV 1348 SM00408: domain 9 of 9, from 1275 to 1334: score 10.9, E = 0.4 *->leGqsVtLtCpasgdpvpnItWlk.gkplp....sgstLtiknvsle + G ++tL+C+ p+ ++ ++g++ p++ + ++ i nv+ KIAA0364 1275 KLGKDITLQCR-GPLPGVEFVLEHdGEEAPqqfsEDGDFVINNVEGK 1320 DsGlYtCvArNsvg<-* G+Y+C+ r + KIAA0364 1321 GIGNYSCSYRLQAY 1334 //