hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-00564456/chunk_1/iprscan-20080502-00564456.nocrc
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Query sequence: KIAA0365
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01805.10.ls Surp module                                    117.2    4.4e-32   2
PF01805.10.fs Surp module                                    113.3    5.3e-32   2
PF01585.13.fs G-patch domain                                  59.7    1.7e-16   1
PF01585.13.ls G-patch domain                                  61.6    2.3e-15   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01805.10.ls   1/2     689   732 ..     1    47 []    58.4  2.2e-14
PF01805.10.fs   1/2     689   732 ..     1    47 []    56.5  1.6e-15
PF01805.10.fs   2/2     887   932 ..     1    47 []    56.8  1.3e-15
PF01805.10.ls   2/2     887   932 ..     1    47 []    58.8  1.7e-14
PF01585.13.fs   1/1    1110  1154 ..     1    45 []    59.7  1.7e-16
PF01585.13.ls   1/1    1110  1154 ..     1    45 []    61.6  2.3e-15

Alignments of top-scoring domains:
PF01805.10.ls: domain 1 of 2, from 689 to 732: score 58.4, E = 2.2e-14
                   *->IkktArfVaknGleFeamlleretkndprFnFLkpsndplhkYYkkk
                      I++++++V++++l++++++l +e   dp+++FL+++n++++kYYk+k
    KIAA0365   689    IDQLVKRVIEGSLSPKERTLLKE---DPAYWFLSDENSLEYKYYKLK 732  

                   <-*
                      
    KIAA0365     -     -    

PF01805.10.fs: domain 1 of 2, from 689 to 732: score 56.5, E = 1.6e-15
                   *->IkktArfVaknGleFeamlleretkndprFnFLkpsndplhkYYkkk
                      I++++++V++++l++++++l +e   dp+++FL+++n++++kYYk+k
    KIAA0365   689    IDQLVKRVIEGSLSPKERTLLKE---DPAYWFLSDENSLEYKYYKLK 732  

                   <-*
                      
    KIAA0365     -     -    

PF01805.10.fs: domain 2 of 2, from 887 to 932: score 56.8, E = 1.3e-15
                   *->IkktArfVaknGleFeamlleretkndprFnFLkpsndplhkYYkkk
                       +k+ArfVa+ G+e e+  +e++t+n p ++FL + n++ +k+Y+kk
    KIAA0365   887    AEKLARFVAQVGPEIEQFSIENSTDN-PDLWFLHDQNSSAFKFYRKK 932  

                   <-*
                      
    KIAA0365     -     -    

PF01805.10.ls: domain 2 of 2, from 887 to 932: score 58.8, E = 1.7e-14
                   *->IkktArfVaknGleFeamlleretkndprFnFLkpsndplhkYYkkk
                       +k+ArfVa+ G+e e+  +e++t+n p ++FL + n++ +k+Y+kk
    KIAA0365   887    AEKLARFVAQVGPEIEQFSIENSTDN-PDLWFLHDQNSSAFKFYRKK 932  

                   <-*
                      
    KIAA0365     -     -    

PF01585.13.fs: domain 1 of 1, from 1110 to 1154: score 59.7, E = 1.7e-16
                   *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdrkGLGae<-
                       +n Gf++LqKMGWkeG GLG+ ++Gi+eP+++     ++GLGa+  
    KIAA0365  1110    DKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGAD   1154 

                   *
                    
    KIAA0365     -   -    

PF01585.13.ls: domain 1 of 1, from 1110 to 1154: score 61.6, E = 2.3e-15
                   *->tsniGfklLqKMGWkeGqGLGkneqGikePieakikpdrkGLGae<-
                       +n Gf++LqKMGWkeG GLG+ ++Gi+eP+++     ++GLGa+  
    KIAA0365  1110    DKNLGFQMLQKMGWKEGHGLGSLGKGIREPVSVGTPSEGEGLGAD   1154 

                   *
                    
    KIAA0365     -   -    

//