hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01131885/chunk_1/iprscan-20080502-01131885.nocrc
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Query sequence: KIAA0375
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02759.9.fs RUN domain                                     172.7    2.5e-49   1
PF02759.9.ls RUN domain                                     174.5    2.5e-49   1
PF07653.7.fs Variant SH3 domain                              33.1    6.8e-09   1
PF07653.7.ls Variant SH3 domain                              34.9    2.6e-07   1
PF00018.18.fs SH3 domain                                      28.3    5.7e-07   1
PF00018.18.ls SH3 domain                                      28.2    2.1e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02759.9.fs   1/1    1063  1199 ..     1   174 []   172.7  2.5e-49
PF02759.9.ls   1/1    1063  1199 ..     1   174 []   174.5  2.5e-49
PF00018.18.ls   1/1    1474  1528 ..     1    59 []    28.2  2.1e-05
PF07653.7.fs   1/1    1475  1528 ..     1    69 []    33.1  6.8e-09
PF07653.7.ls   1/1    1475  1528 ..     1    69 []    34.9  2.6e-07
PF00018.18.fs   1/1    1484  1528 ..    11    59 .]    28.3  5.7e-07

Alignments of top-scoring domains:
PF02759.9.fs: domain 1 of 1, from 1063 to 1199: score 172.7, E = 2.5e-49
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +LCpa++A+l++GLk            af++d+++g+++++++sv++
    KIAA0375  1063    YLCPAVRAVLEDGLK------------AFVLDVIIGQRKNMPWSVVE 1097 

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                    s+     q ++            +++v + l+++vsq+++L+       
    KIAA0375  1098 AST-----QLGP------------STKVLHGLYNKVSQFPELTS------ 1124 

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlL....
                     +++r++  A+i+++Ln +sL++++++L+++e++++++Y+p+++L+  +
    KIAA0375  1125 --HTMRFN--AFILGLLNIRSLEFWFNHLYNHEDIIQTHYQPWGFLsaah 1170 

                   .rdpSdeegCeillslLqgLsaldFsLdlkfe<-*
                   +++p    + e+ll+lLq+L +l+FsLdl+f+   
    KIAA0375  1171 tVCP--GLF-EELLLLLQPLALLPFSLDLLFQ    1199 

PF02759.9.ls: domain 1 of 1, from 1063 to 1199: score 174.5, E = 2.5e-49
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +LCpa++A+l++GLk            af++d+++g+++++++sv++
    KIAA0375  1063    YLCPAVRAVLEDGLK------------AFVLDVIIGQRKNMPWSVVE 1097 

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                    s+     q ++            +++v + l+++vsq+++L+       
    KIAA0375  1098 AST-----QLGP------------STKVLHGLYNKVSQFPELTS------ 1124 

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlL....
                     +++r++  A+i+++Ln +sL++++++L+++e++++++Y+p+++L+  +
    KIAA0375  1125 --HTMRFN--AFILGLLNIRSLEFWFNHLYNHEDIIQTHYQPWGFLsaah 1170 

                   .rdpSdeegCeillslLqgLsaldFsLdlkfe<-*
                   +++p    + e+ll+lLq+L +l+FsLdl+f+   
    KIAA0375  1171 tVCP--GLF-EELLLLLQPLALLPFSLDLLFQ    1199 

PF00018.18.ls: domain 1 of 1, from 1474 to 1528: score 28.2, E = 2.1e-05
                   *->kkvvALYDYearesdELsFkkGDvitvleksddpgWWkgrlkgtgGk
                        v+AL    a++++ LsF kGD++ vl +  + +W+++ +  +   
    KIAA0375  1474    CEVQALCHHLATGPGQLSFHKGDILRVLGRAGG-DWLRCSRGPD--- 1516 

                   eGliPsNYVepv<-*
                    Gl+P  YV++    
    KIAA0375  1517 SGLVPLAYVTLT    1528 

PF07653.7.fs: domain 1 of 1, from 1475 to 1528: score 33.1, E = 6.8e-09
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                       ++a++++ a t+++       Ls++kGd+++V+    ++  ++w +
    KIAA0375  1475    EVQALCHHLA-TGPGQ------LSFHKGDILRVL----GRAGGDWLR 1510 

                   geslggGrrrRGlvPssaveel<-*
                   +++  g     GlvP  +v      
    KIAA0375  1511 CSR--GPDS--GLVPLAYVTLT    1528 

PF07653.7.ls: domain 1 of 1, from 1475 to 1528: score 34.9, E = 2.6e-07
                   *->ygraiedyvaAtdknenleeeeLslkkGdvvkVidvggskdddgwwe
                       ++a++++ a t+++       Ls++kGd+++V+    ++  ++w +
    KIAA0375  1475    EVQALCHHLA-TGPGQ------LSFHKGDILRVL----GRAGGDWLR 1510 

                   geslggGrrrRGlvPssaveel<-*
                   +++  g     GlvP  +v      
    KIAA0375  1511 CSR--GPDS--GLVPLAYVTLT    1528 

PF00018.18.fs: domain 1 of 1, from 1484 to 1528: score 28.3, E = 5.7e-07
                   *->aresdELsFkkGDvitvleksddpgWWkgrlkgtgGkeGliPsNYVe
                      a++++ LsF kGD++ vl +  + +W+++ +  +    Gl+P  YV+
    KIAA0375  1484    ATGPGQLSFHKGDILRVLGRAGG-DWLRCSRGPD---SGLVPLAYVT 1526 

                   pv<-*
                   +    
    KIAA0375  1527 LT    1528 

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