hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01195775/chunk_1/iprscan-20080502-01195775.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0379 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00248 734.3 3.2e-216 28 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00248 1/28 13 42 .. 1 30 [] 5.0 1e+03 SM00248 2/28 46 75 .. 1 30 [] 29.6 0.00043 SM00248 3/28 79 108 .. 1 30 [] 26.1 0.0047 SM00248 4/28 112 141 .. 1 30 [] 23.7 0.027 SM00248 5/28 145 174 .. 1 30 [] 40.2 2.8e-07 SM00248 6/28 178 207 .. 1 30 [] 31.9 8.5e-05 SM00248 7/28 211 240 .. 1 30 [] 34.2 1.8e-05 SM00248 8/28 244 273 .. 1 30 [] 35.3 8.1e-06 SM00248 9/28 277 307 .. 1 30 [] 22.2 0.072 SM00248 10/28 311 340 .. 1 30 [] 19.0 0.67 SM00248 11/28 344 373 .. 1 30 [] 32.6 5.2e-05 SM00248 12/28 377 406 .. 1 30 [] 20.4 0.25 SM00248 13/28 410 439 .. 1 30 [] 38.1 1.2e-06 SM00248 14/28 443 472 .. 1 30 [] 30.1 0.00031 SM00248 15/28 476 506 .. 1 30 [] 24.6 0.014 SM00248 16/28 510 540 .. 1 30 [] 12.7 52 SM00248 17/28 555 584 .. 1 30 [] 20.5 0.24 SM00248 18/28 588 617 .. 1 30 [] 32.3 6.8e-05 SM00248 19/28 622 651 .. 1 30 [] 22.2 0.072 SM00248 20/28 658 687 .. 1 30 [] 33.9 2.2e-05 SM00248 21/28 691 720 .. 1 30 [] 25.4 0.0078 SM00248 22/28 724 753 .. 1 30 [] 25.0 0.011 SM00248 23/28 761 791 .. 1 30 [] 31.0 0.00016 SM00248 24/28 793 824 .. 1 30 [] 16.0 5.4 SM00248 25/28 828 857 .. 1 30 [] 35.4 7.5e-06 SM00248 26/28 861 891 .. 1 30 [] 23.5 0.03 SM00248 27/28 895 924 .. 1 30 [] 21.1 0.16 SM00248 28/28 931 960 .. 1 30 [] 22.3 0.069 Alignments of top-scoring domains: SM00248: domain 1 of 28, from 13 to 42: score 5.0, E = 1e+03 *->dGrTpLHlAaengnlevvklLldkgadina<-* ++ L A+ ng+++ v++L+ k+ d+n KIAA0379 13 RDQPSLVQAIFNGDPDEVRALIFKKEDVNF 42 SM00248: domain 2 of 28, from 46 to 75: score 29.6, E = 0.00043 *->dGrTpLHlAaengnlevvklLldkgadina<-* + rTpLH Aa+ g+ e+++lL+ +ga +na KIAA0379 46 EKRTPLHAAAYLGDAEIIELLILSGARVNA 75 SM00248: domain 3 of 28, from 79 to 108: score 26.1, E = 0.0047 *->dGrTpLHlAaengnlevvklLldkgadina<-* TpLH A+++ ++e v+ Ll+++ad+na KIAA0379 79 KWLTPLHRAVASCSEEAVQVLLKHSADVNA 108 SM00248: domain 4 of 28, from 112 to 141: score 23.7, E = 0.027 *->dGrTpLHlAaengnlevvklLldkgadina<-* + +TpLH+Aa+n+ ++++++L+ ++n+ KIAA0379 112 NWQTPLHIAAANKAVKCAEALVPLLSNVNV 141 SM00248: domain 5 of 28, from 145 to 174: score 40.2, E = 2.8e-07 *->dGrTpLHlAaengnlevvklLldkgadina<-* GrT+LH+Aa +g+ e+vklLl++ga+ina KIAA0379 145 AGRTALHHAAFSGHGEMVKLLLSRGANINA 174 SM00248: domain 6 of 28, from 178 to 207: score 31.9, E = 8.5e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +r ++H+Aa+ g++evvklL+++ga++++ KIAA0379 178 KDRRAIHWAAYMGHIEVVKLLVSHGAEVTC 207 SM00248: domain 7 of 28, from 211 to 240: score 34.2, E = 1.8e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +TpLH Aa++g ++vvk+Lld g+d+n+ KIAA0379 211 KSYTPLHAAASSGMISVVKYLLDLGVDMNE 240 SM00248: domain 8 of 28, from 244 to 273: score 35.3, E = 8.1e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpLH+A++ng+ vv++L+d ga +n KIAA0379 244 YGNTPLHVACYNGQDVVVNELIDCGAIVNQ 273 SM00248: domain 9 of 28, from 277 to 307: score 22.2, E = 0.072 *->dGrTpLHlAaen.gnlevvklLldkgadina<-* G+TpLH Aa+++ +++lL+ +gad+n+ KIAA0379 277 KGFTPLHFAAAStHGALCLELLVGNGADVNM 307 SM00248: domain 10 of 28, from 311 to 340: score 19.0, E = 0.67 *->dGrTpLHlAaengnlevvklLldkgadina<-* dG+TpLH+ a +g+ + + ++++ga i++ KIAA0379 311 DGKTPLHMTALHGRFSRSQTIIQSGAVIDC 340 SM00248: domain 11 of 28, from 344 to 373: score 32.6, E = 5.2e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpLH+Aa++g++ +++ L+ +gad + KIAA0379 344 NGNTPLHIAARYGHELLINTLITSGADTAK 373 SM00248: domain 12 of 28, from 377 to 406: score 20.4, E = 0.25 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+ pLHlAa +g ++++ Ll++g di+ KIAA0379 377 HGMFPLHLAALSGFSDCCRKLLSSGFDIDT 406 SM00248: domain 13 of 28, from 410 to 439: score 38.1, E = 1.2e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* GrT+LH Aa+ gnle+++lLl+ gad+n+ KIAA0379 410 FGRTCLHAAAAGGNLECLNLLLNTGADFNK 439 SM00248: domain 14 of 28, from 443 to 472: score 30.1, E = 0.00031 *->dGrTpLHlAaengnlevvklLldkgadina<-* Gr+pLH+Aa+n n+ ++ +L+ +ga++n+ KIAA0379 443 FGRSPLHYAAANCNYQCLFALVGSGASVND 472 SM00248: domain 15 of 28, from 476 to 506: score 24.6, E = 0.014 *->dGrTpLHlAaen.gnlevvklLldkgadina<-* G+TpLH+Aa ++ + +++++Ll+++a++ + KIAA0379 476 RGCTPLHYAATSdTDGKCLEYLLRNDANPGI 506 SM00248: domain 16 of 28, from 510 to 540: score 12.7, E = 52 *->dGrTpLHlAaengnlevvklLldkga.dina<-* +G+++ H+ a++g+ +++l+ ++ + d+ + KIAA0379 510 QGYNAVHYSAAYGHRLCLQLIASETPlDVLM 540 SM00248: domain 17 of 28, from 555 to 584: score 20.5, E = 0.24 *->dGrTpLHlAaengnlevvklLldkgadina<-* +pLHlAa++g++ ++ L+++ d+++ KIAA0379 555 ATISPLHLAAYHGHHQALEVLVQSLLDLDV 584 SM00248: domain 18 of 28, from 588 to 617: score 32.3, E = 6.8e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* GrTpL lAa +g++e+v L++ ga+i + KIAA0379 588 SGRTPLDLAAFKGHVECVDVLINQGASILV 617 SM00248: domain 19 of 28, from 622 to 651: score 22.2, E = 0.072 *->dGrTpLHlAaengnlevvklLldkgadina<-* rTp+H Aa ng+ e+++lL+ + na KIAA0379 622 LKRTPIHAAATNGHSECLRLLIGNAEPQNA 651 SM00248: domain 20 of 28, from 658 to 687: score 33.9, E = 2.2e-05 *->dGrTpLHlAaengnlevvklLldkgadina<-* +G+TpL+l + ng+ ++v Ll+kga+++a KIAA0379 658 NGQTPLMLSVLNGHTDCVYSLLNKGANVDA 687 SM00248: domain 21 of 28, from 691 to 720: score 25.4, E = 0.0078 *->dGrTpLHlAaengnlevvklLldkgadina<-* GrT+LH a +g++e+v +Ll++ga + + KIAA0379 691 WGRTALHRGAVTGHEECVDALLQHGAKCLL 720 SM00248: domain 22 of 28, from 724 to 753: score 25.0, E = 0.011 *->dGrTpLHlAaengnlevvklLldkgadina<-* GrTp+Hl a+ g++ v+ +Ll++ a+++a KIAA0379 724 RGRTPIHLSAACGHIGVLGALLQSAASMDA 753 SM00248: domain 23 of 28, from 761 to 791: score 31.0, E = 0.00016 *->dGrTpLHlAaengnlevvklLldkga.dina<-* +G+T+LH+A++ng++ +v+lLl+ + ++ KIAA0379 761 HGYTALHWACYNGHETCVELLLEQEVfQKTE 791 SM00248: domain 24 of 28, from 793 to 824: score 16.0, E = 5.4 *->dGrTpLHlAaengnlevvklLldkga..dina<-* + ++pLH+A+ n+n+ +++L+d + + +na KIAA0379 793 NAFSPLHCAVINDNEGAAEMLIDTLGasIVNA 824 SM00248: domain 25 of 28, from 828 to 857: score 35.4, E = 7.5e-06 *->dGrTpLHlAaengnlevvklLldkgadina<-* GrTpLH Aa ++++e+++lLl+++a +n KIAA0379 828 KGRTPLHAAAFTDHVECLQLLLSHNAQVNS 857 SM00248: domain 26 of 28, from 861 to 891: score 23.5, E = 0.03 *->dGrTpLHlAaengnlevvklLldkga.dina<-* G+TpL++Aaeng+ ++v++L+++ ++++ KIAA0379 861 TGKTPLMMAAENGQTNTVEMLVSSASaELTL 891 SM00248: domain 27 of 28, from 895 to 924: score 21.1, E = 0.16 *->dGrTpLHlAaengnlevvklLldkgadina<-* +T+LHlA+++g++ + l+l+k d n+ KIAA0379 895 SKNTALHLACSKGHETSALLILEKITDRNL 924 SM00248: domain 28 of 28, from 931 to 960: score 22.3, E = 0.069 *->dGrTpLHlAaengnlevvklLldkgadina<-* +TpLH+Aa+ng vv++Ll kga++ a KIAA0379 931 ALQTPLHVAARNGLTMVVQELLGKGASVLA 960 //