hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01213915/chunk_1/iprscan-20080502-01213915.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0380 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF09128.1.fs Regulator of G protein signalling-like domai 375.9 1.6e-123 1 PF09128.1.ls Regulator of G protein signalling-like domai 377.6 1.8e-110 1 PF00621.11.fs RhoGEF domain 96.8 2e-28 1 PF00621.11.ls RhoGEF domain 98.6 1.7e-26 1 PF00595.14.fs PDZ domain (Also known as DHR or GLGF) 57.4 1.8e-15 1 PF00595.14.ls PDZ domain (Also known as DHR or GLGF) 59.3 1.2e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00595.14.fs 1/1 64 137 .. 1 86 [] 57.4 1.8e-15 PF00595.14.ls 1/1 64 137 .. 1 86 [] 59.3 1.2e-14 PF09128.1.fs 1/1 324 503 .. 1 239 [] 375.9 1.6e-123 PF09128.1.ls 1/1 324 503 .. 1 239 [] 377.6 1.8e-110 PF00621.11.fs 1/1 755 939 .. 1 207 [] 96.8 2e-28 PF00621.11.ls 1/1 755 939 .. 1 207 [] 98.6 1.7e-26 Alignments of top-scoring domains: PF00595.14.fs: domain 1 of 1, from 64 to 137: score 57.4, E = 1.8e-15 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v+++k ++g+Gf+++g + v +v pG gaA ++G KIAA0380 64 CVIIQK--DQHGFGFTVSGDRI------VLVQSVRPG-GAAMKAG-V 100 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+I++vNG+ ++n sh+e+v+++k+ v+Lt+l KIAA0380 101 KEGDRIIKVNGTMVTNSSHLEVVKLIKSGA--YVALTLL 137 PF00595.14.ls: domain 1 of 1, from 64 to 137: score 59.3, E = 1.2e-14 *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL v+++k ++g+Gf+++g + v +v pG gaA ++G KIAA0380 64 CVIIQK--DQHGFGFTVSGDRI------VLVQSVRPG-GAAMKAG-V 100 qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-* ++GD+I++vNG+ ++n sh+e+v+++k+ v+Lt+l KIAA0380 101 KEGDRIIKVNGTMVTNSSHLEVVKLIKSGA--YVALTLL 137 PF09128.1.fs: domain 1 of 1, from 324 to 503: score 375.9, E = 1.6e-123 *->qcspFqslelLLEKsRPAHLAVFLhhVlsQfDPspLLcYLiavDlYk ++++Fq+le+L KsRPAHL+VFL++++sQ+DPspLL+YL+a ++Y+ KIAA0380 324 SDIIFQDLEKL--KSRPAHLGVFLRYIFSQADPSPLLFYLCA-EVYQ 367 qAYgtsKEaRrlfmeihstFLdrnAppLkvpvpeeiaadlGataDGfdfL q +++K++R+l+++i+++FL++nA pL+v++pe+++a++ KIAA0380 368 Q--ASPKDSRSLGKDIWNIFLEKNA-PLRVKIPEMLQAEI---------- 404 DeCqYYfqidkimcvdrrrpelipeeilRrvlqelqqralpeIqrqLeDe +++l+++e++R+vl+e+q++a+peIq+q++D KIAA0380 405 ------------------DSRLRNSEDARGVLCEAQEAAMPEIQEQIHD- 435 vhPPlvCvtWlFRqKRsmGLglaegeldlLdqeldgDrvtlErERqvaEq +R+KR++GLg+++ge+dlLd ldgD++ rERqvaE+ KIAA0380 436 -----------YRTKRTLGLGSLYGENDLLD--LDGDPL---RERQVAEK 469 iLskleeiLDELstssttESCEeksstlqyailTYmkhlGVk<-* +L++l++iL s++E E++s+++++a++TYm+h+G++ KIAA0380 470 QLAALGDIL------SKYE--EDRSAPMDFALNTYMSHAGIR 503 PF09128.1.ls: domain 1 of 1, from 324 to 503: score 377.6, E = 1.8e-110 *->qcspFqslelLLEKsRPAHLAVFLhhVlsQfDPspLLcYLiavDlYk ++++Fq+le+L KsRPAHL+VFL++++sQ+DPspLL+YL+a ++Y+ KIAA0380 324 SDIIFQDLEKL--KSRPAHLGVFLRYIFSQADPSPLLFYLCA-EVYQ 367 qAYgtsKEaRrlfmeihstFLdrnAppLkvpvpeeiaadlGataDGfdfL q +++K++R+l+++i+++FL++nA pL+v++pe+++a++ KIAA0380 368 Q--ASPKDSRSLGKDIWNIFLEKNA-PLRVKIPEMLQAEI---------- 404 DeCqYYfqidkimcvdrrrpelipeeilRrvlqelqqralpeIqrqLeDe +++l+++e++R+vl+e+q++a+peIq+q++D KIAA0380 405 ------------------DSRLRNSEDARGVLCEAQEAAMPEIQEQIHD- 435 vhPPlvCvtWlFRqKRsmGLglaegeldlLdqeldgDrvtlErERqvaEq +R+KR++GLg+++ge+dlLd ldgD++ rERqvaE+ KIAA0380 436 -----------YRTKRTLGLGSLYGENDLLD--LDGDPL---RERQVAEK 469 iLskleeiLDELstssttESCEeksstlqyailTYmkhlGVk<-* +L++l++iL s++E E++s+++++a++TYm+h+G++ KIAA0380 470 QLAALGDIL------SKYE--EDRSAPMDFALNTYMSHAGIR 503 PF00621.11.fs: domain 1 of 1, from 755 to 939: score 96.8, E = 2e-28 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v++El+ TE+ +r+L+ ld + +++++++ l +++++ +F KIAA0380 755 VINELFVTEASHLRTLRVLDLIFYQRMKKEN-----LMPREELARLF 796 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N+++++e+h++ ++++ ++ p+ + dl l+++ KIAA0380 797 PNLPELIEIHNSWCE-AMKKLREEG-----------PIIKEISDLMLARF 834 .....aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassn +++ ++e qv + +cs++ A el+++ ++ F+ f +e e +++ KIAA0380 835 dgparEELQQVAAQFCSYQSIALELIKT--KQRKESRFQLFMQEAESHPQ 882 tgAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLk + +l L++L++ +qR+++YpLLL ++kht + se+e L KIAA0380 883 CR------RLQLRDLIISEMQRLTKYPLLLESIIKHTEG--GTSEHEKLC 924 kaldalqdlaksiNe<-* a d+ ++++k++Ne KIAA0380 925 RARDQCREILKYVNE 939 PF00621.11.ls: domain 1 of 1, from 755 to 939: score 98.6, E = 1.7e-26 *->vlkElleTEkkYvrdLeildnvymkpLreaaisskplLtpddietiF v++El+ TE+ +r+L+ ld + +++++++ l +++++ +F KIAA0380 755 VINELFVTEASHLRTLRVLDLIFYQRMKKEN-----LMPREELARLF 796 sNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFlelk +N+++++e+h++ ++++ ++ p+ + dl l+++ KIAA0380 797 PNLPELIEIHNSWCE-AMKKLREEG-----------PIIKEISDLMLARF 834 .....aeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassn +++ ++e qv + +cs++ A el+++ ++ F+ f +e e +++ KIAA0380 835 dgparEELQQVAAQFCSYQSIALELIKT--KQRKESRFQLFMQEAESHPQ 882 tgAkddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLk + +l L++L++ +qR+++YpLLL ++kht + se+e L KIAA0380 883 CR------RLQLRDLIISEMQRLTKYPLLLESIIKHTEG--GTSEHEKLC 924 kaldalqdlaksiNe<-* a d+ ++++k++Ne KIAA0380 925 RARDQCREILKYVNE 939 //