hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01264223/chunk_1/iprscan-20080502-01264223.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0383 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01853.9.ls MOZ/SAS family 453.2 3e-133 1 PF01853.9.fs MOZ/SAS family 451.3 1.1e-132 1 PF00628.19.fs PHD-finger 85.6 4.6e-27 3 PF00628.19.ls PHD-finger 87.7 3.3e-23 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00628.19.ls 1/2 215 272 .. 1 51 [] 34.1 4.5e-07 PF00628.19.fs 1/3 215 272 .. 1 51 [] 32.1 6.7e-10 PF00628.19.fs 2/3 274 320 .. 1 51 [] 51.7 3.4e-16 PF00628.19.ls 2/2 274 320 .. 1 51 [] 53.6 6e-13 PF01853.9.fs 1/1 481 668 .. 1 193 [] 451.3 1.1e-132 PF01853.9.ls 1/1 481 668 .. 1 193 [] 453.2 3e-133 Alignments of top-scoring domains: PF00628.19.ls: domain 1 of 2, from 215 to 272: score 34.1, E = 4.5e-07 *->yCsvCgkey....sdaggdllqCDgCdrwfHlaClgpplepeeipe. +Cs+C +++++++ +++ll C +C+ + H++Cl++ +e + + KIAA0383 215 ICSFCLGTKesnrEKKPEELLSCADCGSSGHPSCLKFCPELTTNVKa 261 ..WyCpeCkpk<-* +W+C eCk + KIAA0383 262 lrWQCIECKTC 272 PF00628.19.fs: domain 1 of 3, from 215 to 272: score 32.1, E = 6.7e-10 *->yCsvCgkey....sdaggdllqCDgCdrwfHlaClgpplepeeipe. +Cs+C +++++++ +++ll C +C+ + H++Cl++ +e + + KIAA0383 215 ICSFCLGTKesnrEKKPEELLSCADCGSSGHPSCLKFCPELTTNVKa 261 ..WyCpeCkpk<-* +W+C eCk + KIAA0383 262 lrWQCIECKTC 272 PF00628.19.fs: domain 2 of 3, from 274 to 320: score 51.7, E = 3.4e-16 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C+v g++ +++l+CD+Cdr fH++C++ppl+ ++p++ W+C KIAA0383 274 ACRVQGRN----ADNMLFCDSCDRGFHMECCDPPLS--RMPKgmWIC 314 peCkpk<-* C+pk KIAA0383 315 QVCRPK 320 PF00628.19.ls: domain 2 of 2, from 274 to 320: score 53.6, E = 6e-13 *->yCsvCgkeysdaggdllqCDgCdrwfHlaClgpplepeeipe..WyC C+v g++ +++l+CD+Cdr fH++C++ppl+ ++p++ W+C KIAA0383 274 ACRVQGRN----ADNMLFCDSCDRGFHMECCDPPLS--RMPKgmWIC 314 peCkpk<-* C+pk KIAA0383 315 QVCRPK 320 PF01853.9.fs: domain 1 of 1, from 481 to 668: score 451.3, E = 1.1e-132 *->lrhPPGnEIYRkgniSvFEVDGrkqklYCQnLCLLAKLFLDhKtLYY ++hPP+nEIYR +++SvFEVDG+ k+YCQnLCLLAKLFLDhKtLYY KIAA0383 481 WFHPPANEIYRRKDLSVFEVDGNMSKIYCQNLCLLAKLFLDHKTLYY 527 DVdpFLFYiLtetDekGcHiVGYFSKEKessenYNlACILtLPpYQRkGY DV+pFLFY+Lt++DekGcH+VGY SKEK ++++YN++CI+++P++QR+G+ KIAA0383 528 DVEPFLFYVLTKNDEKGCHLVGYLSKEKLCQQKYNVSCIMIMPQHQRQGF 577 GklLIdFSYeLSrkEgkiGsPEKPLSDLGlLSYrsYWsqtllelLlehkg G++LIdFSY+LSr+Eg+ GsPEKPLSDLG+LSY++YW++++le+L++h KIAA0383 578 GRFLIDFSYLLSRREGQAGSPEKPLSDLGRLSYLAYWKSVILEYLYHHHE 627 ehgeydkitikelSkmTgitveDIisTLqsLnmikyykgqhiiclq<-* +h i+ik++S +Tg++ +DI +TLq+L mi+ ++g ++i+ + KIAA0383 628 RH-----ISIKAISRATGMCPHDIATTLQHLHMIDKRDGRFVIIRR 668 PF01853.9.ls: domain 1 of 1, from 481 to 668: score 453.2, E = 3e-133 *->lrhPPGnEIYRkgniSvFEVDGrkqklYCQnLCLLAKLFLDhKtLYY ++hPP+nEIYR +++SvFEVDG+ k+YCQnLCLLAKLFLDhKtLYY KIAA0383 481 WFHPPANEIYRRKDLSVFEVDGNMSKIYCQNLCLLAKLFLDHKTLYY 527 DVdpFLFYiLtetDekGcHiVGYFSKEKessenYNlACILtLPpYQRkGY DV+pFLFY+Lt++DekGcH+VGY SKEK ++++YN++CI+++P++QR+G+ KIAA0383 528 DVEPFLFYVLTKNDEKGCHLVGYLSKEKLCQQKYNVSCIMIMPQHQRQGF 577 GklLIdFSYeLSrkEgkiGsPEKPLSDLGlLSYrsYWsqtllelLlehkg G++LIdFSY+LSr+Eg+ GsPEKPLSDLG+LSY++YW++++le+L++h KIAA0383 578 GRFLIDFSYLLSRREGQAGSPEKPLSDLGRLSYLAYWKSVILEYLYHHHE 627 ehgeydkitikelSkmTgitveDIisTLqsLnmikyykgqhiiclq<-* +h i+ik++S +Tg++ +DI +TLq+L mi+ ++g ++i+ + KIAA0383 628 RH-----ISIKAISRATGMCPHDIATTLQHLHMIDKRDGRFVIIRR 668 //