hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-01282552/chunk_1/iprscan-20080502-01282552.nocrc
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Query sequence: KIAA0384
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00514.13.ls Armadillo/beta-catenin-like repeat             141.5    2.2e-39   5
PF00514.13.fs Armadillo/beta-catenin-like repeat             140.0    5.8e-39   6
PF02985.12.ls HEAT repeat                                     24.6    0.00034   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00514.13.ls   1/5     425   465 ..     1    41 []    37.5  4.4e-08
PF00514.13.fs   1/6     425   465 ..     1    41 []    35.5  5.2e-09
PF00514.13.fs   2/6     468   509 ..     1    41 []    40.6  1.9e-10
PF00514.13.ls   2/5     468   509 ..     1    41 []    42.6  1.2e-09
PF00514.13.ls   4/5     680   721 ..     1    41 []    23.6  0.00063
PF00514.13.fs   6/6     727   767 ..     1    41 []    30.9  9.9e-08
PF00514.13.ls   5/5     727   767 ..     1    41 []    32.9    1e-06
PF02985.12.ls   3/3     733   769 ..     1    36 []    12.1      1.3

Alignments of top-scoring domains:
PF00514.13.ls: domain 1 of 5, from 425 to 465: score 37.5, E = 4.4e-08
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      n++ k  v+++ ++p+Lv LL++p+ ev   A++AL N+++   
    KIAA0384   425    NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF    465  

PF00514.13.fs: domain 1 of 6, from 425 to 465: score 35.5, E = 5.2e-09
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                      n++ k  v+++ ++p+Lv LL++p+ ev   A++AL N+++   
    KIAA0384   425    NDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISF    465  

PF00514.13.fs: domain 2 of 6, from 468 to 509: score 40.6, E = 1.9e-10
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      +++nk a+ ++ ++p+Lv+LL++ +d ++ e+ +++L+NL++   
    KIAA0384   468    DQDNKIAIKNCDGVPALVRLLRkARDMDLTEVITGTLWNLSS    509  

PF00514.13.ls: domain 2 of 5, from 468 to 509: score 42.6, E = 1.2e-09
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      +++nk a+ ++ ++p+Lv+LL++ +d ++ e+ +++L+NL++   
    KIAA0384   468    DQDNKIAIKNCDGVPALVRLLRkARDMDLTEVITGTLWNLSS    509  

PF00514.13.ls: domain 4 of 5, from 680 to 721: score 23.6, E = 0.00063
                   *->npenkqavveaGalppLvqLLs.spdeevqeeAawALsNLaa<-*
                      +++  +++ +  ++++ ++LL++s+ + ++e++a+A+ NL+a   
    KIAA0384   680    PARGYELLFQPEVVRIYISLLKeSKTPAILEASAGAIQNLCA    721  

PF00514.13.fs: domain 6 of 6, from 727 to 767: score 30.9, E = 9.9e-08
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                          + a++++ al ++ +LL++++e+v+++A +AL+NLa    
    KIAA0384   727    GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV    767  

PF00514.13.ls: domain 5 of 5, from 727 to 767: score 32.9, E = 1e-06
                   *->npenkqavveaGalppLvqLLsspdeevqeeAawALsNLaa<-*
                          + a++++ al ++ +LL++++e+v+++A +AL+NLa    
    KIAA0384   727    GRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAV    767  

PF02985.12.ls: domain 3 of 3, from 733 to 769: score 12.1, E = 1.3
                   *->e.ildellplllkllnDpdpeVReaAaeaLgalaevl<-*
                      +  +++ l ++ +ll+ ++++V +aA  aL +la  +   
    KIAA0384   733    AlRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA    769  

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