hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01282552/chunk_1/iprscan-20080502-01282552.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0384 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00185 141.9 6.9e-38 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00185 1/7 425 465 .. 1 38 [] 35.2 8.7e-06 SM00185 2/7 468 509 .. 1 38 [] 43.1 3.6e-08 SM00185 3/7 510 567 .. 1 38 [] 6.1 84 SM00185 4/7 569 616 .. 1 38 [] 15.6 4.9 SM00185 5/7 679 721 .. 1 38 [] 4.0 1.5e+02 SM00185 6/7 727 767 .. 1 38 [] 30.5 0.00024 SM00185 7/7 817 859 .. 1 38 [] 7.3 59 Alignments of top-scoring domains: SM00185: domain 1 of 7, from 425 to 465: score 35.2, E = 8.7e-06 *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-* nd+ k +v++++g+p Lv LL++++ ev A++aL N+++ KIAA0384 425 NDKVKTDVRKLKGIPVLVGLLdhpKKEVHLGACGALKNISF 465 SM00185: domain 2 of 7, from 468 to 509: score 43.1, E = 3.6e-08 *->ndenkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-* +++nk+a+ ++ g+paLv+LL++ +d ++ ++++++L+Nl+s KIAA0384 468 DQDNKIAIKNCDGVPALVRLLrkarDMDLTEVITGTLWNLSS 509 SM00185: domain 3 of 7, from 510 to 567: score 6.1, E = 84 *->ndenkqavvdaGglpaLvqLL.....................deevq +d k+++vd+ +l aL + + ++++ +++++++ ++++ + e+v+ KIAA0384 510 HDSIKMEIVDH-ALHALTDEViiphsgwerepnedckprhieWESVL 555 keAawaLsNlas<-* ++a++L+N++s KIAA0384 556 TNTAGCLRNVSS 567 SM00185: domain 4 of 7, from 569 to 616: score 15.6, E = 4.9 *->ndenkqavvdaG.glpaLvqLL.........deevqkeAawaLsNla ++e++ ++++ + ++aL+ ++ + +++++d +++++++++L+Nl+ KIAA0384 569 RSEARRKLRECDgLVDALIFIVqaeigqkdsDSKLVENCVCLLRNLS 615 s<-* + KIAA0384 616 Y 616 SM00185: domain 5 of 7, from 679 to 721: score 4.0, E = 1.5e+02 *->nde.nkqavvdaGglpaLvqLL....deevqkeAawaLsNlas<-* ++ + + + + ++ + ++LL++++ + ++++ a+a+ Nl++ KIAA0384 679 SPArGYELLFQPEVVRIYISLLkeskTPAILEASAGAIQNLCA 721 SM00185: domain 6 of 7, from 727 to 767: score 30.5, E = 0.00024 *->ndenkqavvdaGglpaLvqLL...deevqkeAawaLsNlas<-* + a++++++l a+ +LL++++e+v+k+A +aL+Nla KIAA0384 727 GRYIRSALRQEKALSAIADLLtneHERVVKAASGALRNLAV 767 SM00185: domain 7 of 7, from 817 to 859: score 7.3, E = 59 *->ndenkqavvdaGglpaLvqLL.....deevqkeAawaLsNlas<-* n e+++ +++ +g+++Lv ++++++e+ +++Aa +L ++ KIAA0384 817 NLEAAKKLRETQGIEKLVLINksgnrSEKEVRAAALVLQTIWG 859 //