hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01364285/chunk_1/iprscan-20080502-01364285.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0389 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.ls Myosin head (motor domain) 1006.9 6.6e-300 1 PF00063.11.fs Myosin head (motor domain) 1005.0 2.5e-299 1 PF00612.17.ls IQ calmodulin-binding motif 20.1 0.0073 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.fs 1/1 70 770 .. 1 791 [] 1005.0 2.5e-299 PF00063.11.ls 1/1 70 770 .. 1 791 [] 1006.9 6.6e-300 PF00612.17.ls 1/1 825 845 .. 1 21 [] 20.1 0.0073 Alignments of top-scoring domains: PF00063.11.fs: domain 1 of 1, from 70 to 770: score 1005.0, E = 2.5e-299 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp veD++ L+ylnE+++LhN+k+RY +d IYTY+ ++L++vNPY +p KIAA0389 70 VEDNCSLMYLNEATLLHNIKVRYS-KDRIYTYVANILIAVNPYFDIP 115 .iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESG +iY+ e ik Y Gk g pPH+FAiAd+A R+M+ k +QsI++sGESG KIAA0389 116 kIYSSEAIKSYQGKSLGTRPPHVFAIADKAFRDMKVLKMSQSIIVSGESG 165 AGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLE AGKTEntK v++Yl+ g+++ + d i+++NP+LE KIAA0389 166 AGKTENTKFVLRYLTESYGTGQ--------------DIDDRIVEANPLLE 201 AFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVv AFGNAKT+RNNNSSRFGKf eI+F+++ s+ vGg +++YLLEKSR++ KIAA0389 202 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSV----VGGFVSHYLLEKSRIC 247 yQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynP Q ++ERN+HIFY L+agas+ +++L+L+s p++++YLn g KIAA0389 248 VQGKEERNYHIFYRLCAGASEDI-REKLHLSS---PDNFRYLNR-G---- 288 cytv..........................DdgiDDaeeFkdtrkAlkii c +++++++ +++++++ + ++ +D+ DD + F +++A+k i KIAA0389 289 CTRYfanketdkqilqnrkspeylkagsmkDPLLDDHGDFIRMCTAMKKI 338 GftdeeqrsifrilAAILhLGNieGFkqdqatTGneeqAGvtvsedteei G+ dee++++fr++A++LhLGNi+ F++ + ++ +G+ + +++++ KIAA0389 339 GLDDEEKLDLFRVVAGVLHLGNID-FEEAG----STS-GGCNLKNKSAQS 382 leiiaeLLGvDaeeLekaLlsrriktGgggkRretvtkpqnveqAryaRD le aeLLG+D+ +L+ +L++r++ t +gg + ++ +p+ veqA++aRD KIAA0389 383 LEYCAELLGLDQDDLRVSLTTRVMLTTAGGTKGTVIKVPLKVEQANNARD 432 ALAKaiYsRLFdWiVekiNkaLsakeQasdSrGGqaaegdDTVSITVVdl ALAK+ Ys LFd +V+++N+ +++ KIAA0389 433 ALAKTVYSHLFDHVVNRVNQCFPFET------------------------ 458 PraaldktasfIGvLDIyGFEIFaekNSFEQLcINYvNEKLQQfFNhhmF ++fIGvLDI+GFE+F e+NSFEQ+cINY+NEKLQQfFN++++ KIAA0389 459 -------SSYFIGVLDIAGFEYF-EHNSFEQFCINYCNEKLQQFFNERIL 500 klEQEEYkrEgIeWtfIdyglDnqacidLIEkKkPpGIlslLDEeCrfPk k EQE+Y++Eg + ++ y Dnq+cidLIE+ k +GIl +LDEe r+P+ KIAA0389 501 KEEQELYQKEGLGVNEVHY-VDNQDCIDLIEA-KLVGILDILDEENRLPQ 548 atDqtFldKLlqtfsskhprlthFAqkpgrfkkgksrqgkteFiikHYAG ++Dq+F++ ++q + h rl +++++ ++ +++++Fii+H+AG KIAA0389 549 PSDQHFTSAVHQKH-KDHFRL-TI-PRKSKLAVHRNIRDDEGFIIRHFAG 595 dVeYnaegfleKNkDpLfddlisllksSsdepllaeLFpeeelseAaNlt V+Y++++f eKN+D L+ l+sl+ +S+d ++++eLF + KIAA0389 596 AVCYETTQFVEKNNDALHMSLESLICESRD-KFIRELFES---------- 634 lkapdfeadfdeeeaaaksaklgsgkgksgkkknfleTvgsqfkeslgeL s+++++ ++ ++ k +f + vg +fk++l+ L KIAA0389 635 ------------------STNNNKDTKQKAGKLSF-ISVGNKFKTQLNLL 665 mktLsstAnlnPHfvRCIKPNekKkagqFDaslVlhQlrclG...vLEig + L+st ++ f+RCIKPN k+ ++F+ +l+Ql+c+G +vL+ KIAA0389 666 LDKLRST---GASFIRCIKPNLKMTSHHFEGAQILSQLQCSGmvsVLD-- 710 iRirraGFPnRitfdeFlqRYrlLapktwpsgfrpewvgdakkgceliLq +++ G+P+R f e +++Y++ +p++++++ d++ +c+++++ KIAA0389 711 --LMQGGYPSRASFHELYNMYKKYMPDKLARL-------DPRLFCKALFK 751 slrqtpgnlDkeeyrfGkTKiFfR<-* +l +l+ ++y+fG TK+FfR KIAA0389 752 AL-----GLNENDYKFGLTKVFFR 770 PF00063.11.ls: domain 1 of 1, from 70 to 770: score 1006.9, E = 6.6e-300 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp veD++ L+ylnE+++LhN+k+RY +d IYTY+ ++L++vNPY +p KIAA0389 70 VEDNCSLMYLNEATLLHNIKVRYS-KDRIYTYVANILIAVNPYFDIP 115 .iYteeiikaYrGkrrgElpPHiFAiAdeAYRsMlsdkeNQsIlisGESG +iY+ e ik Y Gk g pPH+FAiAd+A R+M+ k +QsI++sGESG KIAA0389 116 kIYSSEAIKSYQGKSLGTRPPHVFAIADKAFRDMKVLKMSQSIIVSGESG 165 AGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNPiLE AGKTEntK v++Yl+ g+++ + d i+++NP+LE KIAA0389 166 AGKTENTKFVLRYLTESYGTGQ--------------DIDDRIVEANPLLE 201 AFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKSRVv AFGNAKT+RNNNSSRFGKf eI+F+++ s+ vGg +++YLLEKSR++ KIAA0389 202 AFGNAKTVRNNNSSRFGKFVEIHFNEKSSV----VGGFVSHYLLEKSRIC 247 yQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgTynP Q ++ERN+HIFY L+agas+ +++L+L+s p++++YLn g KIAA0389 248 VQGKEERNYHIFYRLCAGASEDI-REKLHLSS---PDNFRYLNR-G---- 288 cytv..........................DdgiDDaeeFkdtrkAlkii c +++++++ +++++++ + ++ +D+ DD + F +++A+k i KIAA0389 289 CTRYfanketdkqilqnrkspeylkagsmkDPLLDDHGDFIRMCTAMKKI 338 GftdeeqrsifrilAAILhLGNieGFkqdqatTGneeqAGvtvsedteei G+ dee++++fr++A++LhLGNi+ F++ + ++ +G+ + +++++ KIAA0389 339 GLDDEEKLDLFRVVAGVLHLGNID-FEEAG----STS-GGCNLKNKSAQS 382 leiiaeLLGvDaeeLekaLlsrriktGgggkRretvtkpqnveqAryaRD le aeLLG+D+ +L+ +L++r++ t +gg + ++ +p+ veqA++aRD KIAA0389 383 LEYCAELLGLDQDDLRVSLTTRVMLTTAGGTKGTVIKVPLKVEQANNARD 432 ALAKaiYsRLFdWiVekiNkaLsakeQasdSrGGqaaegdDTVSITVVdl ALAK+ Ys LFd +V+++N+ +++ KIAA0389 433 ALAKTVYSHLFDHVVNRVNQCFPFET------------------------ 458 PraaldktasfIGvLDIyGFEIFaekNSFEQLcINYvNEKLQQfFNhhmF ++fIGvLDI+GFE+F e+NSFEQ+cINY+NEKLQQfFN++++ KIAA0389 459 -------SSYFIGVLDIAGFEYF-EHNSFEQFCINYCNEKLQQFFNERIL 500 klEQEEYkrEgIeWtfIdyglDnqacidLIEkKkPpGIlslLDEeCrfPk k EQE+Y++Eg + ++ y Dnq+cidLIE+ k +GIl +LDEe r+P+ KIAA0389 501 KEEQELYQKEGLGVNEVHY-VDNQDCIDLIEA-KLVGILDILDEENRLPQ 548 atDqtFldKLlqtfsskhprlthFAqkpgrfkkgksrqgkteFiikHYAG ++Dq+F++ ++q + h rl +++++ ++ +++++Fii+H+AG KIAA0389 549 PSDQHFTSAVHQKH-KDHFRL-TI-PRKSKLAVHRNIRDDEGFIIRHFAG 595 dVeYnaegfleKNkDpLfddlisllksSsdepllaeLFpeeelseAaNlt V+Y++++f eKN+D L+ l+sl+ +S+d ++++eLF + KIAA0389 596 AVCYETTQFVEKNNDALHMSLESLICESRD-KFIRELFES---------- 634 lkapdfeadfdeeeaaaksaklgsgkgksgkkknfleTvgsqfkeslgeL s+++++ ++ ++ k +f + vg +fk++l+ L KIAA0389 635 ------------------STNNNKDTKQKAGKLSF-ISVGNKFKTQLNLL 665 mktLsstAnlnPHfvRCIKPNekKkagqFDaslVlhQlrclG...vLEig + L+st ++ f+RCIKPN k+ ++F+ +l+Ql+c+G +vL+ KIAA0389 666 LDKLRST---GASFIRCIKPNLKMTSHHFEGAQILSQLQCSGmvsVLD-- 710 iRirraGFPnRitfdeFlqRYrlLapktwpsgfrpewvgdakkgceliLq +++ G+P+R f e +++Y++ +p++++++ d++ +c+++++ KIAA0389 711 --LMQGGYPSRASFHELYNMYKKYMPDKLARL-------DPRLFCKALFK 751 slrqtpgnlDkeeyrfGkTKiFfR<-* +l +l+ ++y+fG TK+FfR KIAA0389 752 AL-----GLNENDYKFGLTKVFFR 770 PF00612.17.ls: domain 1 of 1, from 825 to 845: score 20.1, E = 0.0073 *->rraaikIQaawRGylaRkryk<-* +a ik+Q+ +R++l+++r+k KIAA0389 825 AEACIKMQKTIRMWLCKRRHK 845 //