HUGE

Gene/Protein Characteristic Table for KIAA0392

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04897
Accession No. :	AB002390
Description :	Ectonucleoside triphosphate diphosphohydrolase 4.
HUGO Gene Name :	ectonucleoside triphosphate diphosphohydrolase 4 (ENTPD4)
Clone Name :	hh00034 [Vector Info]
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5422 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3769 bp

Genome contig ID gi51511724r_23242621
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
ACTGAAAAATCAATAAAACGAAAGTTCATCATCCC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATGGCCCGTAGACTGTGTGGGCTTGCTTCCTTGTCATCTTTGAATCTTCT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 8 r 23342621 23362231 11 99.2 Perfect prediction

Features of the protein sequence	Description

Length: 550 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW63621	100.0	ectonucleoside ...	Homo sapiens
AAC17217	100.0	guanosine-dipho...	Homo sapiens
XP_519659	99.8	ectonucleoside ...	Pan troglodytes
Q9Y227	98.6	Ectonucleoside ...	Homo sapiens
XP_001108472	98.5	ectonucleoside ...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR000407 22 483 PF01150 Nucleoside phosphatase GDA1/CD39

ScanRegExp IPR000407 159 174 PS01238 Nucleoside phosphatase GDA1/CD39

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR000407	22	483	PF01150	Nucleoside phosphatase GDA1/CD39
ScanRegExp	IPR000407	159	174	PS01238	Nucleoside phosphatase GDA1/CD39

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 497 NHYLFSGCFLVVLLAILLYLLR 518 PRIMARY 22

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	497	NHYLFSGCFLVVLLAILLYLLR	518	PRIMARY	22

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: GACCTTCCGAGAGTATTATTC

Primer_r
: TGAATGATGTGACCAACCAAG

PCR conditions
: 95 °C30 sec61 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 8

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: GACCTTCCGAGAGTATTATTC
Primer_r	: TGAATGATGTGACCAACCAAG
PCR product length	: 153 bp
PCR conditions	: 95 °C15 sec62 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3769 bp
Genome contig ID	gi51511724r_23242621
PolyA signal sequence (AATAAA,-24)	+--------+--------+----*----+---- ACTGAAAAATCAATAAAACGAAAGTTCATCATCCC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATGGCCCGTAGACTGTGTGGGCTTGCTTCCTTGTCATCTTTGAATCTTCT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	8	r	23342621	23362231	11	99.2	Perfect prediction

Gene/Protein Characteristic Table for KIAA0392

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information