# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hg01266mrp1.fasta.huge -Q ../query/KIAA0393.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0393, 1433 aa
 vs ./tmplib.23147 library

1986072 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.7936+/-0.00457; mu= 13.8637+/- 0.310
 mean_var=113.0244+/-26.338, 0's: 0 Z-trim: 2  B-trim: 3 in 1/39
 Lambda= 0.120639

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1131  ( 2168 res)   pf08614                    (2168)  299 64.3 2.8e-10


>>KIAA1131  ( 2168 res)   pf08614                         (2168 aa)
 initn: 367 init1: 159 opt: 299  Z-score: 276.3  bits: 64.3 E(): 2.8e-10
Smith-Waterman score: 308;  40.136% identity (61.905% similar) in 147 aa overlap (617-759:781-917)

        590       600       610        620       630       640     
KIAA03 GTIPQAHFLLVMLSMLTLQHSANNLDLLLNSG-TLALAQTALRLIGPSCDSVEEDMNASA
                                     :: :  :. ....: :      :.... .:
KIAA11 GSTATWPLDPPKDEKQGWRHVRIKQMGKNASGQTHYLSLSGFELYGTVNGVCEDQLGKAA
              760       770       780       790       800       810

         650       660       670       680       690       700     
KIAA03 QGASATVLEETRKETAPVQLPVSGPELAAMMKIGTRVMRGVDWKWGDQDGPPPGLGRVIG
       . : :.. .. :   . :        :  :.  :.:: ::.:::: :::: : : : : :
KIAA11 KEAEANLRRQRRLVRSQV--------LKYMVP-GARVTRGLDWKWRDQDGSPQGEGTVTG
              820               830        840       850       860 

         710       720       730       740          750       760  
KIAA03 ELGEDGWIRVQWDTGSTNSYRMGKEGKYDLKLAELPAP---AQPSAEDSDTEDDSEAEQT
       :: ..::: : ::.:..:::::: :::.:::::    :   :.:.  .: .   ...   
KIAA11 EL-HNGWIDVTWDAGGSNSYRMGAEGKFDLKLAPGYDPDTVASPKPVSSTVSGTTQSWSS
              870       880       890       900       910       920

            770       780       790       800       810       820  
KIAA03 ERNIHPTAMMFTSTINLLQTLCLSAGVHAEIMQSEATKTLCGLLRMLVESGTTDKTSSPN
                                                                   
KIAA11 LVKNNCPDKTSAAAGSSSRKGSSSSVCSVASSSDISLGSTKTERRSEIVMEHSIVSGADV
              930       940       950       960       970       980




1433 residues in 1 query   sequences
1986072 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:19:45 2008 done: Thu Dec 18 15:19:46 2008
 Total Scan time:  0.830 Total Display time:  0.060

Function used was FASTA [version 34.26.5 April 26, 2007]