# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hf00236.fasta.huge -Q ../query/KIAA0394.ptfa ./tmplib.23147 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0394, 417 aa
 vs ./tmplib.23147 library

1987088 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.3406+/-0.00831; mu= -6.4250+/- 0.563
 mean_var=296.4722+/-68.603, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.074487

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0290  ( 906 res)   ha06644                     ( 906)  299 45.3 1.7e-05


>>KIAA0290  ( 906 res)   ha06644                          (906 aa)
 initn: 166 init1: 166 opt: 299  Z-score: 190.4  bits: 45.3 E(): 1.7e-05
Smith-Waterman score: 299;  26.644% identity (58.131% similar) in 289 aa overlap (141-416:21-286)

              120       130       140       150       160       170
KIAA03 KENTITINCVTFPHPDTMPEQQLLKPTEWSYCDYFWADKKDPQGNGTVAGFELLLQKQLK
                                     . ..::..:.         :::.: ..  .
KIAA02           LDRHWTGPAGVSTETIRMSYFGEHFWGEKNH--------GFEVLYHSVKQ
                         10        20        30                40  

              180       190       200       210       220       230
KIAA03 GKQMQKEMSEFIRERIKIEEDYAKNLAKLSQNSLASQEEGSLGEAWAQVKKSLADEAEVH
       :    ::...:::::  ::: :.: .::::. .  .   :...  :   . :    :  :
KIAA02 GPISTKELADFIRERATIEETYSKAMAKLSKLASNGTPMGTFAPLWEVFRVSSDKLALCH
             50        60        70        80        90       100  

              240       250       260          270       280       
KIAA03 LKFSAKLHSEVEKPLMNFRENFKKDMKKCDHHIA---DLRKQLASRYASVEKARKALTER
       :... ::.. . : .. . :.  :  ::: ....   :  . :..    . :.:.   .:
KIAA02 LELTRKLQDLI-KDVLRYGEEQLKTHKKCKEEVVSTLDAVQVLSGVSQLLPKSRENYLNR
            110        120       130       140       150       160 

       290       300       310       320       330       340       
KIAA03 QRDLEMKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTTL
         : :      ...  . ..... ::. :. .:...: : :. ::.:.. . ..:. ..:
KIAA02 CMDQE------RLRRESTSQKEMDKAETKTKKAAESLRRSVEKYNSARADFEQKMLDSAL
                   170       180       190       200       210     

       350       360       370               380         390       
KIAA03 ELERLEVERVEMIRQHLCQYTQLRHETDM--------FNQSTVE--PVDQLLRKVDPAKD
       ... .:  ... ..  : .:..  ..: .        :.:. .:   :..::::   .: 
KIAA02 RFQAMEETHLRHMKALLGSYAHSVEDTHVQIGQVHEEFKQN-IENVSVEMLLRKFAESKG
         220       230       240       250        260       270    

       400       410                                               
KIAA03 RELWVREHKTGNIRPVDMEI                                        
            :: : :   :.:.:                                         
KIAA02 TG---RE-KPG---PLDFEAYSAAALQEAMKRLRGAKAFRLPGLSRREREPEPPAAVDFL
              280          290       300       310       320       




417 residues in 1 query   sequences
1987088 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:19:47 2008 done: Thu Dec 18 15:19:48 2008
 Total Scan time:  0.400 Total Display time:  0.010

Function used was FASTA [version 34.26.5 April 26, 2007]