hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-01450231/chunk_1/iprscan-20080502-01450231.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0394 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00611.13.fs Fes/CIP4 homology domain 91.5 2.5e-26 1 PF00611.13.ls Fes/CIP4 homology domain 93.3 6.8e-25 1 PF00397.16.fs WW domain 51.1 2.4e-13 1 PF00397.16.ls WW domain 53.1 8.4e-13 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00397.16.fs 1/1 20 49 .. 1 30 [] 51.1 2.4e-13 PF00397.16.ls 1/1 20 49 .. 1 30 [] 53.1 8.4e-13 PF00611.13.fs 1/1 143 237 .. 1 107 [] 91.5 2.5e-26 PF00611.13.ls 1/1 143 237 .. 1 107 [] 93.3 6.8e-25 Alignments of top-scoring domains: PF00397.16.fs: domain 1 of 1, from 20 to 49: score 51.1, E = 2.4e-13 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgW + +p+Gr YY+N+ T++T+We+P KIAA0394 20 LPPGWQSYLSPQGRRYYVNTTTNETTWERP 49 PF00397.16.ls: domain 1 of 1, from 20 to 49: score 53.1, E = 8.4e-13 *->lppgWeertdpdGrpYYyNhnTktTqWekP<-* lppgW + +p+Gr YY+N+ T++T+We+P KIAA0394 20 LPPGWQSYLSPQGRRYYVNTTTNETTWERP 49 PF00611.13.fs: domain 1 of 1, from 143 to 237: score 91.5, E = 2.5e-26 *->dgFwselns......ddgykaLlkrlddglrlledlkkFlreRakiE d+Fw++ ++++++++++g++ Ll+++ +g+++ +++ +F+reR+kiE KIAA0394 143 DYFWADKKDpqgngtVAGFELLLQKQLKGKQMQKEMSEFIRERIKIE 189 eeYAkkLqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvlls e+YAk+L+kls++ ++++++s ++aw++++ KIAA0394 190 EDYAKNLAKLSQN-----------------SLASQEEGSL-GEAWAQVKK 221 etdqlsklHsqlseqL<-* + +++++H+++s+ L KIAA0394 222 SLADEAEVHLKFSAKL 237 PF00611.13.ls: domain 1 of 1, from 143 to 237: score 93.3, E = 6.8e-25 *->dgFwselns......ddgykaLlkrlddglrlledlkkFlreRakiE d+Fw++ ++++++++++g++ Ll+++ +g+++ +++ +F+reR+kiE KIAA0394 143 DYFWADKKDpqgngtVAGFELLLQKQLKGKQMQKEMSEFIRERIKIE 189 eeYAkkLqklskkyfnkkRkSdgsvskdsltekgpdslsslkkawnvlls e+YAk+L+kls++ ++++++s ++aw++++ KIAA0394 190 EDYAKNLAKLSQN-----------------SLASQEEGSL-GEAWAQVKK 221 etdqlsklHsqlseqL<-* + +++++H+++s+ L KIAA0394 222 SLADEAEVHLKFSAKL 237 //