hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02015158/chunk_1/iprscan-20080502-02015158.nocrc
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Query sequence: KIAA0403
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00169.19.fs PH domain                                       75.4    1.7e-22   1
PF00169.19.ls PH domain                                       77.4      4e-20   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00169.19.fs   1/1      21   119 ..     1    92 []    75.4  1.7e-22
PF00169.19.ls   1/1      21   119 ..     1    92 []    77.4    4e-20

Alignments of top-scoring domains:
PF00169.19.fs: domain 1 of 1, from 21 to 119: score 75.4, E = 1.7e-22
                   *->vikeGwLlkkg.....gkkswkkRyfvLfddvLlyykdkk.kkpkgs
                        ++GwL+kk+++++    +wkk +++L++++L++y +   +k  g 
    KIAA0403    21    ADCQGWLYKKKekgsfLSNKWKKFWVILKGSSLYWYSNQMaEKADGF 67   

                   ipLsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa
                   ++L + +v+++++ k+k++F+i++++ +t++++ae+ +e++ W++ + sa
    KIAA0403    68 VNLPDFTVERASECKKKHAFKISHpQIKTFYFAAENVQEMNVWLNKLGSA 117  

                   ir<-*
                   +    
    KIAA0403   118 VI    119  

PF00169.19.ls: domain 1 of 1, from 21 to 119: score 77.4, E = 4e-20
                   *->vikeGwLlkkg.....gkkswkkRyfvLfddvLlyykdkk.kkpkgs
                        ++GwL+kk+++++    +wkk +++L++++L++y +   +k  g 
    KIAA0403    21    ADCQGWLYKKKekgsfLSNKWKKFWVILKGSSLYWYSNQMaEKADGF 67   

                   ipLsgiqvtkvpdnkrkncFeirt.dretlllqaeseeerkeWvkaiqsa
                   ++L + +v+++++ k+k++F+i++++ +t++++ae+ +e++ W++ + sa
    KIAA0403    68 VNLPDFTVERASECKKKHAFKISHpQIKTFYFAAENVQEMNVWLNKLGSA 117  

                   ir<-*
                   +    
    KIAA0403   118 VI    119  

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