hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-02033314/chunk_1/iprscan-20080502-02033314.nocrc
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Query sequence: KIAA0404
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF09333.1.ls ATG C terminal domain                          161.1    2.7e-45   1
PF09333.1.fs ATG C terminal domain                          159.0    1.1e-44   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF09333.1.fs   1/1    1853  1950 ..     1    99 []   159.0  1.1e-44
PF09333.1.ls   1/1    1853  1950 ..     1    99 []   161.1  2.7e-45

Alignments of top-scoring domains:
PF09333.1.fs: domain 1 of 1, from 1853 to 1950: score 159.0, E = 1.1e-44
                   *->kaiSlYadQPedlkqGlqeAYeSLgrginiaadaiiavprevrqesk
                        + ++ +QP dl++G+++AY  +++gi+++a++i+ v+++ + e+k
    KIAA0404  1853    ARRLRRGQQPADLREGVAKAYDTVREGILDTAQTICDVASRGH-EQK 1898 

                   gaqgAakaVvraaPiaviRPaIGaTEAVSktLlGirNqlDPdnrkemrdK
                   g++gA++ V+r+ P+ v++P+I+aTEA+S++L+G+rNq++Pd++k++  K
    KIAA0404  1899 GLTGAVGGVIRQLPPTVVKPLILATEATSSLLGGMRNQIVPDAHKDHALK 1948 

                   YK<-*
                   ++   
    KIAA0404  1949 WR    1950 

PF09333.1.ls: domain 1 of 1, from 1853 to 1950: score 161.1, E = 2.7e-45
                   *->kaiSlYadQPedlkqGlqeAYeSLgrginiaadaiiavprevrqesk
                        + ++ +QP dl++G+++AY  +++gi+++a++i+ v+++ + e+k
    KIAA0404  1853    ARRLRRGQQPADLREGVAKAYDTVREGILDTAQTICDVASRGH-EQK 1898 

                   gaqgAakaVvraaPiaviRPaIGaTEAVSktLlGirNqlDPdnrkemrdK
                   g++gA++ V+r+ P+ v++P+I+aTEA+S++L+G+rNq++Pd++k++  K
    KIAA0404  1899 GLTGAVGGVIRQLPPTVVKPLILATEATSSLLGGMRNQIVPDAHKDHALK 1948 

                   YK<-*
                   ++   
    KIAA0404  1949 WR    1950 

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