hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-02235290/chunk_1/iprscan-20080502-02235290.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0416 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 118.9 1.3e-32 10 PF00560.23.fs Leucine Rich Repeat 103.8 4.8e-28 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.fs 2/10 99 121 .. 1 24 [] 13.1 0.016 PF00560.23.ls 2/10 99 121 .. 1 24 [] 15.0 0.26 PF00560.23.ls 3/10 123 145 .. 1 24 [] 12.7 1.1 PF00560.23.ls 4/10 147 169 .. 1 24 [] 19.1 0.015 PF00560.23.fs 4/10 147 169 .. 1 24 [] 17.3 0.0011 PF00560.23.ls 5/10 171 193 .. 1 24 [] 14.1 0.47 PF00560.23.fs 5/10 171 193 .. 1 24 [] 12.2 0.027 PF00560.23.ls 6/10 195 217 .. 1 24 [] 15.4 0.2 PF00560.23.fs 6/10 195 217 .. 1 24 [] 13.5 0.012 PF00560.23.fs 7/10 219 241 .. 1 24 [] 12.9 0.017 PF00560.23.ls 7/10 219 241 .. 1 24 [] 14.8 0.29 PF00560.23.ls 9/10 267 289 .. 1 24 [] 11.7 1.7 PF00560.23.ls 10/10 291 313 .. 1 24 [] 8.2 7.8 Alignments of top-scoring domains: PF00560.23.fs: domain 2 of 10, from 99 to 121: score 13.1, E = 0.016 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+L++ N +++ ++ ++++++l KIAA0416 99 QLTWLHLDH-N-QIS-TVKEDaFqGL 121 PF00560.23.ls: domain 2 of 10, from 99 to 121: score 15.0, E = 0.26 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+L++ N +++ ++ ++++++l KIAA0416 99 QLTWLHLDH-N-QIS-TVKEDaFqGL 121 PF00560.23.ls: domain 3 of 10, from 123 to 145: score 12.7, E = 1.1 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+eL Ls+ N ++ lp+ +++ l KIAA0416 123 KLKELILSS-N-KIF-YLPNTtFtQL 145 PF00560.23.ls: domain 4 of 10, from 147 to 169: score 19.1, E = 0.015 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++LdLs N +l+ sl+++ + +l KIAA0416 147 NLQNLDLSF-N-QLS-SLHPElFyGL 169 PF00560.23.fs: domain 4 of 10, from 147 to 169: score 17.3, E = 0.0011 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++LdLs N +l+ sl+++ + +l KIAA0416 147 NLQNLDLSF-N-QLS-SLHPElFyGL 169 PF00560.23.ls: domain 5 of 10, from 171 to 193: score 14.1, E = 0.47 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+L++ N sl +++p+ + ++ KIAA0416 171 KLQTLHLRS-N-SL-RTIPVRlFwDC 193 PF00560.23.fs: domain 5 of 10, from 171 to 193: score 12.2, E = 0.027 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L++L+L++ N sl +++p+ + ++ KIAA0416 171 KLQTLHLRS-N-SL-RTIPVRlFwDC 193 PF00560.23.ls: domain 6 of 10, from 195 to 217: score 15.4, E = 0.2 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le LdLs N +l +sl+ +++ +l KIAA0416 195 SLEFLDLST-N-RL-RSLARNgFaGL 217 PF00560.23.fs: domain 6 of 10, from 195 to 217: score 13.5, E = 0.012 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le LdLs N +l +sl+ +++ +l KIAA0416 195 SLEFLDLST-N-RL-RSLARNgFaGL 217 PF00560.23.fs: domain 7 of 10, from 219 to 241: score 12.9, E = 0.017 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+eL+L++ N +lt ++ ++ l KIAA0416 219 KLRELHLEH-N-QLT-KINFAhFlRL 241 PF00560.23.ls: domain 7 of 10, from 219 to 241: score 14.8, E = 0.29 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +L+eL+L++ N +lt ++ ++ l KIAA0416 219 KLRELHLEH-N-QLT-KINFAhFlRL 241 PF00560.23.ls: domain 9 of 10, from 267 to 289: score 11.7, E = 1.7 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +Le+LdL g N + + ++ ++ + KIAA0416 267 TLEKLDLTG-N-EI-KAIDLTvFeTM 289 PF00560.23.ls: domain 10 of 10, from 291 to 313: score 8.2, E = 7.8 *->nLeeLdLsgCNpsltgslpss.l.nl<-* nL++L +++ N +l+ sl+s l++l KIAA0416 291 NLKILLMDN-N-KLN-SLDSKiLnSL 313 //