HUGE

Gene/Protein Characteristic Table for KIAA0417

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK00071
Accession No. :	AB007877
Description :	Heat shock 70 kDa protein 12A.
HUGO Gene Name :	heat shock 70kDa protein 12A (HSPA12A)
Clone Name :	hh00790 [Vector Info]
Flexi ORF Clone :	pF1KA0417
Source :	Human adult brain

Features of the cloned DNA sequence	Description

Length: 5721 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3588 bp

Genome contig ID gi89161187r_118320694
PolyA signal sequence
(AATAAA,-23)
+----*----+----*----+----*----+----
TCACAGACGCCTAATAAAGCAAAACTCTGAATCTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATGTGGCCCAGATTTTTTTTCCCCCCATCCTGGGTTTGCAAACTGCATGA

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 10 r 118420694 118492075 12 100.0 Perfect prediction

Features of the protein sequence	Description

Length: 710 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
O43301	100.0	Heat shock 70 k...	Homo sapiens
XP_529348	99.8	heat shock prot...	Pan troglodytes
XP_001095628	99.1	heat shock prot...	Macaca mulatta
EDL94544	96.7	heat shock 70kD...	Rattus norvegicus
EDL01811	96.5	heat shock prot...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR Description

Experimental conditions

Primer_f
: AGTGAATGAGACCCCAGTAGC

Primer_r
: TGTATGCTGGGAAACGGCTTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR	Description

RH mapping information	Description

Chromosome No.

: 10

Experimental conditions

Panel name	: GeneBridge 4
Primer_f	: AGTGAATGAGACCCCAGTAGC
Primer_r	: TGTATGCTGGGAAACGGCTTG
PCR product length	: 185 bp
PCR conditions	: 95 °C15 sec64 °C60 sec30 cycles

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3588 bp
Genome contig ID	gi89161187r_118320694
PolyA signal sequence (AATAAA,-23)	+--------+--------+----*----+---- TCACAGACGCCTAATAAAGCAAAACTCTGAATCTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* ATGTGGCCCAGATTTTTTTTCCCCCCATCCTGGGTTTGCAAACTGCATGA

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	10	r	118420694	118492075	12	100.0	Perfect prediction

Gene/Protein Characteristic Table for KIAA0417

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information